Gene detail

Detailed information of g114.t2 in Tripedalia maipoensis

Genomic Location: scaffold_1:7046222...7076473
NR annotation: no NCBI-NR hit recorded
Species abbreviation TMAIP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g114.t2

ATGGCGGCGGGTAGGGCCTTCTCACAGCAACACGGAGCGAAGAAAAAAACCGCCGTTTCCTTCACTATTCGTGATGAGATTGAATTAAGAAATCGCCTAGGTGTCAACTGCTTGCAGTATGACTATAGACTGAGGCGGCTTTTCTCTGCAGGCAGAGATTCTATCATACGGTGCTGGAATACCGATGACTTAGATGGAAGCCAACTTCAGTTGTCATTTGAGCATCATACAGACTGGGTGAATAGTCTTGTGCTCTGCAGAAATGGAAAGACATTGCTCTCAGCATCGTCAGATACCACAGTCAAAGTCTGGGATGCGTACGGTGGCTACTGCATGTCGACATTACGCACGCACAAAGATTACGTGAAGGCCCTGGCATATGCACAGGACAAGGAACAAGTGGCCTCTGGAGGGTTCGACCGGCAAATCTTTCTTTGGGATGTCAATGTTCTAACAGCCCTGACTGCCACTAACAATACAGTCATGACATCATCACTAAACGGGCAGAAAGACTCCATTTATAGCCTTGCTCTGAACCCAGCTGGCACTGTGCTGGTTTCGGGATCCACGGAAAAGGCCTTGCGGGTCTGGGACCCTCGAACTTGTGGCAAGATCATGAAGCTGAAGGGCCACACCGACAACGTGAAAACAGTTTTGCTGAACGGGGACGGGACGCAGTGCTTGTCTGGAAGTTCCGATGGCACTGTGCGCCTTTGGTCTCTTGGACAGCAGCGGTGCATAGCGACCTACAGGATTCACGATGAAGGAGTATGGGCGTTAGCAGCTGATGAGCATTTCTCTTATTTTTATTCTGGGGGTAAAGATAAGAAAGTCTTTCACACAACACTGTGTGGGGAAGAAACGTCCACTCTGTTGCTGCAAGAGAAAGCCCCCGTTTTGTCGCTCCAGCTGGTCTACAATCCACTCTCTATCTGGGTAGCGACGTCAAACTCTGATCTGAATTGCTGGAGTTTGCAGGGGTTTATGCAGGGATTAACCAAGCCGGTCTGTGTGCCTCCAGAAATGAACGACCACGATGCTGAGTTAGAAGAGACAGTACCCACTGCGTCCTCTCCATCGGCCACAATCAAGGGTGGAAATGGCATCAAAAGTATTCACATACTAAATGATAAACGACATGTGCTGACTAAGGATTCGGAACAGAACGTGGCATTGTGGGACATACTCAAGGCATGCAAAGTTACCGATCTTGGGAAAATTAATTACGAAGACGAGGTGCACAAACGTCGACAAATGGTTTATGTCCCAAACTGGTTTTCTGTGGATGCTAAAACTGGCATGCTAACAGTTACTCTGGAGGAGTCTGATTGTTTCTCGGCCTGGATCGTGCTTGATGATGTGGCTGACCTGAAGGCGATCGATGCCAACCGAGCAAACTCTTGCGATTTTCGATTTGTGAATTATGGACTGTTGCTTCTGCAAGCACTGCTCGAACATTGGCCGGAGACCCAGAAGCCCGTGTCCAGTGAACTAGACAGTGAAGTTGATGGCCTGGTCAGGGAGTCGCCAGTTACAGGGTCTGACATCAAAGTGCAGGTTGACCACCCCGCCGTCGGTAATGGCTTTTTCCGACTTCCTAACCATACTCCGCTGGTCTTTGGTGAAGCTGGAGGGTGTGGTCGCACCTTCTTTCGCCTTCTTGTGTCAGACGCCAGTGGTGAAAATGAATGCTCAATCCTGCAGGACACTGTACCCGGATGGCTCTACGATGTCGTGGTTAAGCGAGTGCAGCCAAAGTTCAACAAGATAGCCTTCTACTTGCAGCCTCTCTCTCATAACGGGTCCAAAAGCAGTAAAAGAGATCGATTATCTGCCAGTGACATGGTTCACGTGCGCAAAGTGATGGAACACGTGTACGAGAAGAATGTTCTCTCAGACAATACCTCGCAAGCACAAGCAGGAGCGGCCAACAAGCAAATGCAGCCGGATATCTCTGCTGTGGTGGAATCCAAAATTGAGCTTTACTGCAATGATCAACTCTTGGACCCCCGAATGGACTTGAGAACTGTACGCTGTTTCATCTGGAAAACTGGCGGCGAGCTAGTTTTGCAGTACAAAATTCTAAAATGA

Transcript

g114.t2

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD\|RAWUL · all ubiquitin genes in this species
Ubiquitin family	ULD\|UBL\|SUMO · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF11816 all species →	DUF3337	Domain of unknown function (DUF3337)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR021772 all species →	Family	WDR48/Bun107	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR051246 all species →	Family	WD repeat-containing protein 48	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19862 all species →	WD REPEAT-CONTAINING PROTEIN 48	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15361	WDR48, UAF1; WD repeat-containing protein 48	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.