Gene detail

Detailed information of g11406.t1 in Montipora capitata

Genomic Location: Sc0000342:68679...102941
NR annotation: XP_029179547.2, ATP-binding cassette sub-family F member 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

g11406.t1

atggtgaaaaagaagggcaaaaagagctctgagagcaagaaaaaattggatcttgcggctgcagttgaggcagcagagcaaggatttgaagatgaagtttcaaagctgaacttgaattcgactgattttgaaacctcagtgtcagaagatccaactggaaatgaaggcgcaaatgacgatgagatcggcacaagcaacaacgaagaagaaggtgctgccctcatgaattataaccccccagaagaaaacgcctcgacagaaaatatagaggatacagttgatcaacagaaactgagcaaaaaagagctaaagaaactcaagaaaaagcaaaagtttgaatcagaagttcaagaagtagcaggatcccagttttcagtgtctcagcaagagtcatcctcaaaaactggaattttggaaaatgcccttgatataaaggtagagaagtttagtatttctgcccgtggaaaagatctctttgtgaacgcaaacctgaatatcactgctggcagacgatatggcttagttggacctaatggtatgggaaaaacaacccttttaacacatattgctgccagaaagcttgccattcctccaaacatagatgttcttctttgtgagcaagatgtggaggcaactgaagcacctgcatttgatgtggtgttaaaagcagataagaaaagacttgagttgttagaagaggaaaagcgtttggttgcattgagtgaaaatggagatgaagaagcaacagaaaaactgaaggaggtgtatgttgagttagaggctataggtgcagcatctgcagaatcaagagtccgcaggatattggcgggtcttggtttcacatcagaaatgcaacagagacctgtcaatcacttttctggtggatggaggatgcgtgtttcccttgcaagagctctctttatggaacctacactactgatgttagatgaacccacaaaccatctggatctgaatgcagtcatttggctagacaactaccttcaaaactggaagaagacattgctcattgtgtctcacgatcaatactttctggacagcatctgtacagatattatgcatttagatcaacagaaactgtactactaccgaggaaattatgagcagtttaagaaaatgtacctacagaaggttaaagaacaagagaaagcttataataaacagcaaaagcaactgaaggatctcaaagcatctggtcaatcaaggaagcaagcggaagagaaaacaaaggcagtgcaaggaagaaagaacaaaaagggaggaaagaaagatttgcccaatgaggatgatcttgaacctgtggaacttatcaagaaacccaaagagtatgttgtcaagttctcctttcctttgccaccgccactcaatccacctatcttgggtttgaaatctgtaacatttggttaccccaaccaacctaagttgttcattaatctggattttggaattgacatgaaatctcgaattgctgttgtgggtaataatggagttggtaaaagtactcttttgaagcttttaataggtcaacttgaaccgttgaagggagagtcaatacgaaatcacagacttcgtttaggttcttataaccaacactctgctgatcagctaaatatggaagattcaccagtggagtatcttcagaaaaagtataacttggattatcaaacagcaagaaaacacctgggaagatttggtctagtgagccatgctcacaccatcaaaactagagatttatcaggtggacagaagtcacgtgttgctttcgcggatttggcactcagtaacccggatgtcattgtactggacgaacctacgaataacttggacatagaatctatagatgctcttgctgacgccataaatgaatttactggaggagtcttactagtgagccacgatgcgcgtcttattcttgaaacatcttgtcaactgtgggttgtggaaagtcagacaataactgaagtggatggtgatttcgatgattataggcaagaaatattggagaaacttggtgaagaagttattgccaagtcgcattaa

Transcript

g11406.t1

ATGGTGAAAAAGAAGGGCAAAAAGAGCTCTGAGAGCAAGAAAAAATTGGATCTTGCGGCTGCAGTTGAGGCAGCAGAGCAAGGATTTGAAGATGAAGTTTCAAAGCTGAACTTGAATTCGACTGATTTTGAAACCTCAGTGTCAGAAGATCCAACTGGAAATGAAGGCGCAAATGACGATGAGATCGGCACAAGCAACAACGAAGAAGAAGGTGCTGCCCTCATGAATTATAACCCCCCAGAAGAAAACGCCTCGACAGAAAATATAGAGGATACAGTTGATCAACAGAAACTGAGCAAAAAAGAGCTAAAGAAACTCAAGAAAAAGCAAAAGTTTGAATCAGAAGTTCAAGAAGTAGCAGGATCCCAGTTTTCAGTGTCTCAGCAAGAGTCATCCTCAAAAACTggaattttggaaaatgccctTGATATAAAGGTAGAGAAGTTTAGTATTTCTGCCCGTGGAAAAGATCTCTTTGTGAACGCAAACCTGAATATCACTGCTGGCAGACGATATGGCTTAGTTGGACCTAATGGTATGGGAAAAACAACCCTTTTAACACATATTGCTGCCAGAAAGCTTGCCATTCCTCCAAACATAGATGTTCTTCTTTGTGAGCAAGATGTGGAGGCAACTGAAGCACCTGCATTTGATGTGGTGTTAAAAGCAGATAAGAAAAGACTTGAGTTGTTAGAAGAGGAAAAGCGTTTGGTTGCATTGAGTGAAAATGGAGATGAAGAAGCAACAGAAAAACTGAAGGAGGTGTATGTTGAGTTAGAGGCTATAGGTGCAGCATCTGCAGAATCAAGAGTCCGCAGGATATTGGCGGGTCTTGGTTTCACATCAGAAATGCAACAGAGACCTGTCAATCACTTTTCTGGTGGATGGAGGATGCGTGTTTCCCTTGCAAGAGCTCTCTTTATGGAACCTACACTACTGATGTTAGATGAACCCACAAACCATCTGGATCTGAATGCAGTCATTTGGCTAGACAACTACCTTCAAAACTGGAAGAAGACATTGCTCATTGTGTCTCACGATCAATACTTTCTGGACAGCATCTGTACAGATATTATGCATTTAGATCAACAGAAACTGTACTACTACCGAGGAAATTAtgAGCAGTTTAAGAAAATGTACCTACAGAAGGTTAAAGAACAAGAGAAAGCTTATAATAAACAGCAAAAGCAACTGAAGGATCTCAAAGCATCTGGTCAATCAAGGAAGCAAGCGGAAGAGAAAACAAAGGCAGTGCAAGgaagaaagaacaaaaagggaggaaagaaagatttgCCCAATGAGGATGATCTTGAACCTGTGGAACTTATCAAGAAACCCAAAGAGTATGTTGTCAAGTTCTCCTTTCCTTTGCCACCGCCACTCAATCCACCTATCTTGGGTTTGAAATctGTAACATTTGGTTACCCCAACCAACCTAAGTTGTTCATTAATCTGGATTTTGGAATTGACATGAAATCTCGAATTGCTGTTGTGGGTAATAATGGAGTTGGTAAAAGTACTCTTTTGAAGCTTTTAATAGGTCAACTTGAACCGTTGAAGGGAGAGTCAATACGAAATCACAGACTTcgtTTAGGTTCTTATAACCAACACTCTGCTGATCAGCTAAATATGGAAGATTCACCAGTGGAGTATCTTCAGAAAAAGTATAACTTGGATTATCAAACAGCAAGAAAACACCTGGGAAGATTTGGTCTAGTGAGCCATGCTCACACCATCAAAACTAGAGATTTATCAGGTGGACAGAAGTCACGTGTTGCTTTCGCGGATTTGGCACTCAGTAACCCGGATGTCATTGTACTGGACGAACCTACGAATAACTTGGACATAGAATCTATAGATGCTCTTGCTGACGCCATAAATGAATTTACTGGAGGAGTCTTACTAGTGAGCCACGATGCGCGTCTTATTCTTGAAACATCTTGTCAACTGTGGGTTGTGGAAAGTCAGACAATAACTGAAGTGGATGGTGATTTCGATGATTATAGGCAAGAAATATTGGAGAAACTTGGTGAAGAAGTTATTGCCAAGTCGcattaa

Protein

Uniprot

Uniprot term	Description
Q6MG08	ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus OX=10116 GN=Abcf1 PE=1 SV=1
Q6P542	ATP-binding cassette sub-family F member 1 OS=Mus musculus OX=10090 GN=Abcf1 PE=1 SV=1
Q8NE71	ATP-binding cassette sub-family F member 1 OS=Homo sapiens OX=9606 GN=ABCF1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12848	ABC_tran_Xtn	ABC transporter	Domain	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR032781	Domain	ABC-transporter extension domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR050611	Family	ATP-binding cassette sub-family F member, EF3 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06184	ABCF1; ATP-binding cassette, subfamily F, member 1	-	Translation factors	ko03012	deepkoala