Gene detail

Detailed information of g1144.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAJ7340256.1, hypothetical protein OS493_002988 [Desmophyllum pertusum]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O55123	Stromelysin-2 OS=Mus musculus OX=10090 GN=Mmp10 PE=2 SV=1
O70138	Neutrophil collagenase OS=Mus musculus OX=10090 GN=Mmp8 PE=2 SV=2
O88766	Neutrophil collagenase OS=Rattus norvegicus OX=10116 GN=Mmp8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000139 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000173 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002153 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002609 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007996 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008016 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0017598 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03188 all species →	Cytochrom_B561	Eukaryotic cytochrome b561	Family	Interproscan
PF00045 all species →	Hemopexin	Hemopexin	Repeat	Interproscan
PF00413 all species →	Peptidase_M10	Matrixin	Domain	Interproscan
PF12774 all species →	AAA_6	Hydrolytic ATP binding site of dynein motor region	Domain	Interproscan
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan
PF01695 all species →	IstB_IS21	IstB-like ATP binding protein	Domain	Interproscan
PF01704 all species →	UDPGP	UTP--glucose-1-phosphate uridylyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR043205 all species →	Family	Cytochrome b561/Cytochrome b reductase 1-like	Interproscan
IPR006593 all species →	Domain	Cytochrome b561/ferric reductase transmembrane	Interproscan
IPR016174 all species →	Homologous_superfamily	Di-haem cytochrome, transmembrane	Interproscan
IPR021190 all species →	Family	Peptidase M10A	Interproscan
IPR033739 all species →	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR036365 all species →	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR018487 all species →	Repeat	Hemopexin-like repeats	Interproscan
IPR036375 all species →	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR018486 all species →	Conserved_site	Hemopexin, conserved site	Interproscan
IPR001818 all species →	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR043157 all species →	Homologous_superfamily	Dynein heavy chain, AAA1 domain, small subdomain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035699 all species →	Domain	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR002611 all species →	Domain	IstB-like ATP-binding domain	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR038844 all species →	Family	Cilia- and flagella-associated protein 157	Interproscan
IPR002618 all species →	Family	UDPGP family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10106 all species →	CYTOCHROME B561-RELATED	Interproscan
PTHR10201 all species →	MATRIX METALLOPROTEINASE	Interproscan
PTHR45703 all species →	DYNEIN HEAVY CHAIN	Interproscan
PTHR30050 all species →	CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA	Interproscan
PTHR31954 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022904 all species →	Biological Process	respiratory electron transport chain	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0030574 all species →	Biological Process	collagen catabolic process	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0070569 all species →	Molecular Function	uridylyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08360	CYB561; transmembrane ascorbate-dependent reductase	EC:7.2.1.3	Transporters	ko02000	deepkoala
K25609	CFAP157; cilia- and flagella-associated protein 157	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →