Gene detail

Detailed information of g11461.t2 in Acropora digitifera

Genomic Location: chr5Alt:19288292...19299237
NR annotation: XP_015775141.1, PREDICTED: solute carrier family 26 member 6-like isoform X3 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11461.t2

ATGGAAAGATCTCTATTATTACAAGAAACACCCGACGTAAAAATCAGTCGAAAAGTATGCAATGAATATCTTTTGCATTCAACAATTGATAGCCATTCTTCGGAGCCATTCTCACGCGATAAGCACTGTCAATACTACTTGTTCGTGCTGTCAAAAAAACTCGCTTCAAGGTTGTGTCGTTGGCACGGAATTTCTCGATTTCTCGTCAGTTTATTTCCAATCTTCATTTGGCTGCCGAAATACAACATAAAGAAAGATTTGTTGGCTGATATCAGCGGAGGACTGACTGTTGCAGTCATGCATATTCCTTTAGGTCTTGCGTTTGCTATGCTAGCTTCTCTACCTCCTGTGACTGGTCTCTACACCGCTCTTATTCCAGTGTTGGTTTACATGCTCATGGGTACCTCGCGACATTTATCCGTTGGCAGTTTCGCTGTTATTTCCTTGATGGTTGCTCAGGTCTGCGAACGAGAACTGGGTTCCATACAAATGGAGACAAGTCTCTCTCCTAGCAATGATTCAGACATCAGTCCTACTTCACCAGCTTCCTCTAACAGCCTCTGGACACCAACGGACGCCATCAAACTGGAAATTGCGGTTTCTCTGTCATTCCTTGTAGGCATAATTCAGGTTGCTATGGGTGCAGCTCAGCTGGGTTTTTTGGCCACTTTTATGTCAGATCCAATGATCAGTGGTTTCACCACAGGGTCAGCGGTGCTTGTTGTCATCAGTCAAGTCAAACACATCCTTGGACTCAAGGTGCCACAGATCCCGGCACCGCTGGCCGCACCAAAGGCTGTTGTTTATATGCTGAAGAATATCCTTTCTTGTAACGTTGGAACCATTATAACGGGTGTCCTGTCTCTCGTGATTTTGATCGGACTGAAAAAAGTCAATGAGCGATTCAAGAGCAAGATGAAAGTTCCTATTCCAGCTGAACTACTTGTGGTTGTTGTTGGAACAGCAATATCATACGGAGCAGCAATAAATAAGAATTTTGCAGTTTCGATTCTAGGGAAAATACCTAAGGGACTGCCCCCTCTTAGTCTGCCGACCTTTTCTTTGTTGCCAAAGATCTTCCCAGATGCTTTTGTAATCGCAGTTGTGATTTTTGCGACAAACATTTCACTGTCGAAAATGTTTGCAAAGAAGCGTGGATACTCAGTAGACCCCAATCAGGAATTAATAGCGTATGGCGTGGGAAATGTTGCTGGCTCTTTCTCGTCTTGTTTTGCGATTTGTAACGCTTTGGCGCGAACAGCTGTTCAGGAGAATCTCGCTAACACACAGCTGTGCAGTATCATCGTGATCGCAATGATTCTTCTGGTCCTGCTTTTTATTGCGCCTCTGTTCTTCCATCTACCCAAGCCCATTCTAGCGGCCGTTGTGATTGCCAATCTTGTTGGCCTTTTGAGGCAGTTTTCAAGACTGAAAGTGTTGTGGAAAATACATAAACCGGATGCTGTTGTGTGGTTTTTCACTTGTTTTGGCGTAATAGCAATGGGCGTTGACGTGGGGCTCGGCATTGGAGTCATGTGCGCATTGTTTGCTGTCGTTCTTACTCTTTCCAGGCCAAAATATACATTGCTTGGTAGAGTATGGGATACCGAGCTGTACCGTGATGTCAAACAATGTCGTAGAGCTTCGGAGGTCTCTGGCGTTAAAGTGATGAGATTTGAGTCTTCTTTGTACTTCGGCAACGTGGAACGCTTTAGGAGCGCTCTTGTTACGATTGCCGGGCAGGATCCCACTATGCAACAGGGCACGCGCCAGGAGATAAAACTCGTCGGGAAAGGAGACGCTGATGATAATGAGGCCCTACTGGAAAACGAGCATAGCGAGCAAATGGGCAGCAATGAAAAAAGTGCCAACGGGAAGCTACCACATGCCGATGAAAGCAACCTTATTGAAGTAGAGGTCGCACAACCAGAGCAACGTATCCACACTGTCGTGATTGACTGTAGCAGTTTTACATTTATCGATTCTGTTGGATTACTCGCTCTCCCTTCGATTATGAAGGAGTTTGAAAAGATTGGAATTCGTATACTTTTGTCGGGATGCTCGTCCAACATAACCAATAGACTTGTAAATTCCACGGGAGGTACTGGAACAAACACAGTGGACAGTCATGCGATGTTTCCGTCAATACATGACGCTGTCATGTCGGCCGCACCATCACTTGATTCTGCGGTAAGTATCAAGTTATCCTGA

Transcript

chr5Alt.g11461.t2

ACCCAAGAGAGGCAACGCTTCAGCATGTGTTGCCCAGCTTTAGTCGGCCTCAACTAAAATGGAAAGATCTCTATTATTACAAGAAACACCCGACGTAAAAATCAGTCGAAAAGTATGCAATGAATATCTTTTGCATTCAACAATTGATAGCCATTCTTCGGAGCCATTCTCACGCGATAAGCACTGTCAATACTACTTGTTCGTGCTGTCAAAAAAACTCGCTTCAAGGTTGTGTCGTTGGCACGGAATTTCTCGATTTCTCGTCAGTTTATTTCCAATCTTCATTTGGCTGCCGAAATACAACATAAAGAAAGATTTGTTGGCTGATATCAGCGGAGGACTGACTGTTGCAGTCATGCATATTCCTTTAGGTCTTGCGTTTGCTATGCTAGCTTCTCTACCTCCTGTGACTGGTCTCTACACCGCTCTTATTCCAGTGTTGGTTTACATGCTCATGGGTACCTCGCGACATTTATCCGTTGGCAGTTTCGCTGTTATTTCCTTGATGGTTGCTCAGGTCTGCGAACGAGAACTGGGTTCCATACAAATGGAGACAAGTCTCTCTCCTAGCAATGATTCAGACATCAGTCCTACTTCACCAGCTTCCTCTAACAGCCTCTGGACACCAACGGACGCCATCAAACTGGAAATTGCGGTTTCTCTGTCATTCCTTGTAGGCATAATTCAGGTTGCTATGGGTGCAGCTCAGCTGGGTTTTTTGGCCACTTTTATGTCAGATCCAATGATCAGTGGTTTCACCACAGGGTCAGCGGTGCTTGTTGTCATCAGTCAAGTCAAACACATCCTTGGACTCAAGGTGCCACAGATCCCGGCACCGCTGGCCGCACCAAAGGCTGTTGTTTATATGCTGAAGAATATCCTTTCTTGTAACGTTGGAACCATTATAACGGGTGTCCTGTCTCTCGTGATTTTGATCGGACTGAAAAAAGTCAATGAGCGATTCAAGAGCAAGATGAAAGTTCCTATTCCAGCTGAACTACTTGTGGTTGTTGTTGGAACAGCAATATCATACGGAGCAGCAATAAATAAGAATTTTGCAGTTTCGATTCTAGGGAAAATACCTAAGGGACTGCCCCCTCTTAGTCTGCCGACCTTTTCTTTGTTGCCAAAGATCTTCCCAGATGCTTTTGTAATCGCAGTTGTGATTTTTGCGACAAACATTTCACTGTCGAAAATGTTTGCAAAGAAGCGTGGATACTCAGTAGACCCCAATCAGGAATTAATAGCGTATGGCGTGGGAAATGTTGCTGGCTCTTTCTCGTCTTGTTTTGCGATTTGTAACGCTTTGGCGCGAACAGCTGTTCAGGAGAATCTCGCTAACACACAGCTGTGCAGTATCATCGTGATCGCAATGATTCTTCTGGTCCTGCTTTTTATTGCGCCTCTGTTCTTCCATCTACCCAAGCCCATTCTAGCGGCCGTTGTGATTGCCAATCTTGTTGGCCTTTTGAGGCAGTTTTCAAGACTGAAAGTGTTGTGGAAAATACATAAACCGGATGCTGTTGTGTGGTTTTTCACTTGTTTTGGCGTAATAGCAATGGGCGTTGACGTGGGGCTCGGCATTGGAGTCATGTGCGCATTGTTTGCTGTCGTTCTTACTCTTTCCAGGCCAAAATATACATTGCTTGGTAGAGTATGGGATACCGAGCTGTACCGTGATGTCAAACAATGTCGTAGAGCTTCGGAGGTCTCTGGCGTTAAAGTGATGAGATTTGAGTCTTCTTTGTACTTCGGCAACGTGGAACGCTTTAGGAGCGCTCTTGTTACGATTGCCGGGCAGGATCCCACTATGCAACAGGGCACGCGCCAGGAGATAAAACTCGTCGGGAAAGGAGACGCTGATGATAATGAGGCCCTACTGGAAAACGAGCATAGCGAGCAAATGGGCAGCAATGAAAAAAGTGCCAACGGGAAGCTACCACATGCCGATGAAAGCAACCTTATTGAAGTAGAGGTCGCACAACCAGAGCAACGTATCCACACTGTCGTGATTGACTGTAGCAGTTTTACATTTATCGATTCTGTTGGATTACTCGCTCTCCCTTCGATTATGAAGGAGTTTGAAAAGATTGGAATTCGTATACTTTTGTCGGGATGCTCGTCCAACATAACCAATAGACTTGTAAATTCCACGGGAGGTACTGGAACAAACACAGTGGACAGTCATGCGATGTTTCCGTCAATACATGACGCTGTCATGTCGGCCGCACCATCACTTGATTCTGCGGTAAGTATCAAGTTATCCTGATAATGCATAACGAATTAACTAAGGTTTCCCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T2C4	Prestin OS=Danio rerio OX=7955 GN=slc26a5 PE=2 SV=1
A0FKN5	Prestin OS=Gallus gallus OX=9031 GN=SLC26A5 PE=1 SV=1
Q9BXS9	Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00916 all species →	Sulfate_transp	Sulfate permease family	Family	Interproscan
PF01740 all species →	STAS	STAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011547 all species →	Domain	SLC26A/SulP transporter domain	Interproscan
IPR036513 all species →	Homologous_superfamily	STAS domain superfamily	Interproscan
IPR002645 all species →	Domain	STAS domain	Interproscan
IPR001902 all species →	Family	SLC26A/SulP transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11814 all species →	SULFATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015106 all species →	Molecular Function	bicarbonate transmembrane transporter activity	Interproscan
GO:0015108 all species →	Molecular Function	chloride transmembrane transporter activity	Interproscan
GO:0015116 all species →	Molecular Function	sulfate transmembrane transporter activity	Interproscan
GO:0019531 all species →	Molecular Function	oxalate transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14703	SLC26A5, PRES; solute carrier family 26, member 5	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.