Gene detail

Detailed information of g11479.t1 in Acropora digitifera

Genomic Location: chr5Alt:19598222...19618117
NR annotation: XP_029208469.2, uncharacterized protein LOC114972102 isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr5Alt.g11479.t1

ACCGTCGTCTATAGATAGGTGTGTCAAAAGTGTCCTTGTTACCTCCTCCATGTGCACTACGTTCAAGACATAGAATGCATCCGTGATTTATAGTGCGTAAGTATACTTCTGCCCAAGTCATGAGACATCTAGCGAGCTTGTTAACTGTCTGGAGTTTATTATGTTGCTGTTTTCAAGAGAATATGGTCGAGAGTTTCAAGTGTGGATCAGGCCAAATGACAGTCCAGTGGCCAAATGGTACCTTTAAACAATGTTTGCATTGCGCAGAGTGTCACCCTGGCCGTGGATTATATCCACACAAATGTGGTGACATTGTAAAATATCCAGTAACAATTGAGTGCAAAAAATGCGACAGTGGAAAAACATTTTCAGATACATATGACACTAGCACATGTAAGCTCTGTCACTCATGTGCAGAGCATGAGGTTGTAACAAAAAAATGCACCCTGAGCTCAGACACTAAATGCAGTAAGACTTGCAACTCTGGCTATTTCTTCAGCGAGCCACAGCATGTTTGCAAAAGGTGTTCTTACTGTTGTTTGGATGGCAAGGATGAGGAACAACCGCAATGCATCAACCAAGGATTAAAAGCTTTCAATCTATATTGCAGTCCCAGACCAGACAGCACATGCAACCCAAGTACTCCAACAAGCTCAGTGGTATCTACTGAGTCTACTGATGTGTCCCTAAGCAGCTCACCCAAGCATCCCTATATGCCAGAATCTCAGCAACAAAATGGGAAATTTGCTTTAATATTGTCATGTGTGGGATTGGGCTCATTGTTTGTATTCGTTATACTTTTTGGAGCAATTTATTGTCTGCGAAAGAAGATCTGGAGTAGAAGAAATAGAGATTGTAATTTGAGAAATCTATCAAATATGGGGGAAGAGCGTGTTTGCTTTGAAACAAAAGGAAACATGTTAGTTCATCCAACACAAGTGTTGCCACAACAACAGAATCAAGGTTTTGTGCCAACTCCACAAGGATCTCACACAGGAACACCTTCTCAGACTGACGATGAACTTGATGAGTTGCCGGGTGTTGAATCTGTAGACCCAAAGCATTCTAGGAGGAGACCAGGCAGAACCAGAAGGAGACCAGACAGAACTGAAGAGATAAGGGATGATAGTTTAAGAGAGAACCATCTCGATAACAAAGAGGTTGAAAATGCTCAAACTTCTGGCATTGTTGATGGAAAAGATGCACAGAGTGGACATGAAAGAAAGCATTCAATAAGTGGCCAAATACTTCGCCGGTTATCCAGCATTTCCAATGATTATCAGTTGTTGCCAGTAGAGCTGATGAGGCTACGATGTGTTTCAGCGGGTGGACCTCAGAGAAAGAGGTCCAGAGGTAACTCACTTTTGAACGCATTGAGGAAATCATCCATCCACACCGTTAAGGAAGAGAATCCAGACCGACCCTCAGACGTAACCATCCAGCTGGTTACAAACGGTCCAAAAATACCAGAGGCTAATTCAAGAGTGGAATTTCAGTGCACAGTCAGAGGATGTCAACAAGTGTTTTATCGGTGGTATAAAGATGAGCAAGAGTTACAAGAAGAGGATAAGTCAACCCTTATCCTTGATCCGCTTAAAGTGCAAGATTTTGGCTTTTACAAATGTGAAGTGAGAAGTGACAAACGCTATGATTCAATTTGCGTTGAATCGAATGTGGTAGATCTCGACGTCACACCTGCTGAAGGAAAGAGCTACAGAAAGCTATCAGAGGTTTTTAACAGTGATATGAATTTAAAGGAGACTGTGGCAAATCTACTTGAGAAGGAGACCACTGCGTGCAGAAAAGCATACAAACACGTTGCTTTCCACTACAATATGAAAGGTATTGATCACCTTGAAGTTCAACGGAAAACCAGTCCAGGAGAAGACGTCCTTGTCTATCTTGAAACAGCCCTTCCAGACTTAACTGTTTACCACTTCTGTAAGGTACTCAAGGGCGAAAATATAAGACGGCTTGATATTGTAAAAAAATTGGTAGATTACCTTATCTGATACATCGTAACGGTGCGAAGAGTTAATTGATATTCTGGCAAAATTTTAACCATTCAAACTGAAAGGAAGAAAAACGTAGGAGAAGGTACAATATTCGCTATTACTTTTGCCATTCAAAAGGTGTTTGTTTTCTCCCTTATGTGCTAAAGCAACGTGACCTGATTCTAGATCAAGTGAAACGAAAATAACAGAGAGCAAAGCATACCTTCTCTCCTCGCGCTTACCTTACTTGTCACTTCCCCATCAGGGCTAGCTGTCGGACTGATTCCCCTGATTTCAATTGTTACTAGGTATATGGCTGAAGAGAAATAGTTTTAAGTATTATGATTAAGATACAGTTAGCACCATATTCTTGTCATAATGTCGTAAGTACTAGTAGGCCAAGTTACATTATTGCGCGTCTTTTTTTAAGGCTTCTTAACTAGAGTAACAAATTAGTGTAGGAAACTGTATTTTCAAGTTGTTCCTTTTTTGCTATTTGCAAATTGTACAGTTACAAGCACATGACAGGTTTATTAATCTTCCAGCATTCCTTGTAAGCTATAAAATTGAACCACTTGTTGATGAATGGAGATAGTTTTCTAATGTTGTAGTGTGTATATTTTTTGGCGATTTTTTATGTGATTTTTAGAGGGTGAAACCTGATGCTTGAAGTATTTGTTTTCGTATAAATTTTATTTAACGAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052302 all species →	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605 all species →	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005035 all species →	Molecular Function	death receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0015026 all species →	Molecular Function	coreceptor activity	Interproscan
GO:0048406 all species →	Molecular Function	nerve growth factor binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g11479.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.