Detailed information of g1149.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NIM29487.1, C4-dicarboxylate ABC transporter substrate-binding protein [Gammaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5SK82Lactate-binding periplasmic protein TTHA0766 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=TTHA0766 PE=1 SV=1
Q0VFP5Protein CWC15 homolog OS=Xenopus tropicalis OX=8364 GN=cwc15 PE=2 SV=1
Q6NUB2Protein CWC15 homolog A OS=Xenopus laevis OX=8355 GN=cwc15-a PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF03480DctPBacterial extracellular solute-binding protein, family 7FamilyInterproscan
PF01607CBM_14Chitin binding Peritrophin-A domainDomainInterproscan
PF04889Cwf_Cwc_15Cwf15/Cwc15 cell cycle control proteinFamilyInterproscan
PF00013KH_1KH domainDomainInterproscan
PF10231COA8Cytochrome c oxidase assembly factor 8FamilyInterproscan
PF17838PH_16PH domainDomainInterproscan
PF00621RhoGEFRhoGEF domainDomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR026289FamilySolute binding protein, TakP-likeInterproscan
IPR038404Homologous_superfamilyTRAP transporter solute receptor DctP superfamilyInterproscan
IPR018389FamilyTRAP transporter solute receptor DctPInterproscan
IPR036508Homologous_superfamilyChitin binding domain superfamilyInterproscan
IPR002557DomainChitin binding domainInterproscan
IPR051940FamilyChitin-binding developmental regulatorInterproscan
IPR006973FamilyPre-mRNA-splicing factor Cwf15/Cwc15Interproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR047275DomainRNA-binding protein Nova-1/2, type I K Homology domain 1Interproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR018796FamilyCytochrome c oxidase assembly factor 8Interproscan
IPR004087DomainK Homology domainInterproscan
IPR041020DomainARHGEF1-like, PH domainInterproscan
IPR000219DomainDbl homology (DH) domainInterproscan
IPR035899Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR050296FamilyAntennapedia-type homeoboxInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22955RETROTRANSPOSONInterproscan
PTHR33376-Interproscan
PTHR23301CHITIN BINDING PERITROPHIN-AInterproscan
PTHR12718CELL CYCLE CONTROL PROTEIN CWF15Interproscan
PTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINInterproscan
PTHR45872RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM DInterproscan
PTHR45659HOMEOBOX PROTEIN HOXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0031317Cellular Componenttripartite ATP-independent periplasmic transporter complexInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0008061Molecular Functionchitin bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0097193Biological Processintrinsic apoptotic signaling pathwayInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0001664Molecular FunctionG protein-coupled receptor bindingInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009952Biological Processanterior/posterior pattern specificationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12863CWC15; protein CWC15-Spliceosomeko03041deepkoala

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