Detailed information of g115.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCH1556295.1, TRAP transporter fused permease subunit [Pseudomonadales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6NU08Myotubularin-related protein 10-B OS=Xenopus laevis OX=8355 GN=mtmr10-b PE=2 SV=1
Q5U581Myotubularin-related protein 10-A OS=Xenopus laevis OX=8355 GN=mtmr10-a PE=2 SV=1
Q7TPM9Myotubularin-related protein 10 OS=Mus musculus OX=10090 GN=Mtmr10 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyZBTB
Ubiquitin FamilyE3|E3 adaptor Cullin RING|BTB
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 activity|HECT
Ubiquitin FamilyE3|E3 activity RING|PHD
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF06602Myotub-relatedMyotubularin-like phosphatase domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF07707BACKBTB And C-terminal KelchDomainInterproscan
PF01208URO-DUroporphyrinogen decarboxylase (URO-D)DomainInterproscan
PF00651BTBBTB/POZ domainDomainInterproscan
PF01344Kelch_1Kelch motifRepeatInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF07524Bromo_TPBromodomain associatedDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF01532Glyco_hydro_47Glycosyl hydrolase family 47RepeatInterproscan
PF02545MafMaf-like proteinDomainInterproscan
PF06808DctMTripartite ATP-independent periplasmic transporter, DctM componentFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR042410FamilyTransducin beta-like protein 2Interproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR034670DomainCheckpoint kinase 1, catalytic domainInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR010569DomainMyotubularin-like, phosphatase domainInterproscan
IPR029021Homologous_superfamilyProtein-tyrosine phosphatase-likeInterproscan
IPR030564FamilyMyotubularin familyInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR006361FamilyUroporphyrinogen decarboxylase HemEInterproscan
IPR011705DomainBTB/Kelch-associatedInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR000210DomainBTB/POZ domainInterproscan
IPR038071Homologous_superfamilyUROD/MetE-like superfamilyInterproscan
IPR000257DomainUroporphyrinogen decarboxylase (URO-D)Interproscan
IPR037293Homologous_superfamilyGalactose oxidase, central domain superfamilyInterproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR006565DomainBromodomain associated domainInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR051070FamilyNF-kappa-B InhibitorInterproscan
IPR044674FamilyER degradation-enhancing alpha-mannosidase-like protein 1/2/3Interproscan
IPR001382FamilyGlycoside hydrolase family 47Interproscan
IPR012341Homologous_superfamilySix-hairpin glycosidase-like superfamilyInterproscan
IPR036026Homologous_superfamilySeven-hairpin glycosidasesInterproscan
IPR000569DomainHECT domainInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR003697FamilyNucleoside triphosphate pyrophosphatase Maf-like proteinInterproscan
IPR029001Homologous_superfamilyInosine triphosphate pyrophosphatase-likeInterproscan
IPR010656DomainTRAP C4-dicarboxylate transport system permease DctM subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44321TRANSDUCIN BETA-LIKE PROTEIN 2Interproscan
PTHR24346MAP/MICROTUBULE AFFINITY-REGULATING KINASEInterproscan
PTHR10807MYOTUBULARIN-RELATEDInterproscan
PTHR34072ENZYMATIC POLYPROTEIN-RELATEDInterproscan
PTHR21091METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATEDInterproscan
PTHR46452TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3Interproscan
PTHR46680NF-KAPPA-B INHIBITOR ALPHAInterproscan
PTHR45679ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2Interproscan
PTHR43213BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATEDInterproscan
PTHR43849BLL3936 PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0030968Biological Processendoplasmic reticulum unfolded protein responseInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0035556Biological Processintracellular signal transductionInterproscan
GO:0000077Biological ProcessDNA damage checkpoint signalingInterproscan
GO:0004438Molecular Functionphosphatidylinositol-3-phosphate phosphatase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0046856Biological Processphosphatidylinositol dephosphorylationInterproscan
GO:0004853Molecular Functionuroporphyrinogen decarboxylase activityInterproscan
GO:0006779Biological Processporphyrin-containing compound biosynthetic processInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006783Biological Processheme biosynthetic processInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0002039Molecular Functionp53 bindingInterproscan
GO:0005669Cellular Componenttranscription factor TFIID complexInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0004571Molecular Functionmannosyl-oligosaccharide 1,2-alpha-mannosidase activityInterproscan
GO:1904380Biological Processendoplasmic reticulum mannose trimmingInterproscan
GO:1904382Biological Processmannose trimming involved in glycoprotein ERAD pathwayInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0047429Molecular Functionnucleoside triphosphate diphosphatase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22371G2H3; G2/M phase-specific E3 ubiquitin-protein ligaseEC:2.3.2.26
Protein phosphatases and associated proteinsko01009deepkoala
DNA repair and recombination proteinsko03400deepkoala
Pyrimidine metabolismko00240deepkoala
Transcription machineryko03021deepkoala
Ubiquitin systemko04121deepkoala

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