Gene detail

Detailed information of g11503.t1 in Montipora capitata

Genomic Location: Sc0000347:15512...34052
NR annotation: XP_029193800.2, exosome complex exonuclease RRP44-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11503.t1

atgttattggtgtgtttgtttgcacatgcagctcaggagtatgttgaaagctttgaaggatgtgagggattagcagaccgactggcactccagactgaaactggacaagatcaggtagatgacaagaaaaggggaaagctggtttatcctgagcaccttcctctcacaagaattcaagctggactcaaaggtggaaggtatcttcagggtacttttcaccgaagtagggaaaactatactgaagcttatgtctttgtgcacaatggagataagcaggtgttcattcaaagtctaatgaatctcaaccgtgcagttcatgaggatattgttgcagttgagatcttgccgaaaagtcagtggacttgtccatcatctgttgtcaccacaacattgactgaaaatgacaaggaagatgatgatgatgatgatgatgatgatgatgaagatgttgataaaaataatgaccatctgaagttgaatggaggcagcaaaaacaaggtgctatcaggaaaagttattggaatcataaagaggaactggcgaccatattgtggtgtcctttccaagtcgtcaaaaccacagggtacgagacatctgttcatagctgctgagagaagaattcccagggtcaccattgaaactagacaagcgtcagccctagaagggcagagaattgtggttagcattgactcttggcctcagaattctaaatatcctgtgggtcactttgtccgaaagctgggggccattggtgacaaggaaaccgagaacgaagtgttgcttttagagcgagatgtgccacacttgcctttctcagctgcagtacaaaaggaccttcccgtcatgccatgggccatcacggatgaggatatggaaagtcgtttggatcttcgccatgttgcagtttgtagcattgatcctcctggttgtacggatatcgatgatgctttgcactggagattactggagagtggaaattatgaggttggtgtgcatatagctgatgtgacacattttatcagaccagggacatctctggatgatgaagcagccaataggggtaccacagtctatctcacggataagcgaattgacatggtacctggtcttctcagctcagatctttgttctttgagatgcaatgttgacagactggcgttttcctgcatatggcaaatgactccacaagctgagattgtctcaacaaagttcacaaaaagtattatctgctcaaggatgtccttcacatatgctgaagctcaaatgcgaattgatgatccaagtcaaaaggacgaaatcacagtgagtctcaggcatctcaacgagctcgcaaagatcttgaaaggaaggagaattgagcagggggctctgactcttgcgtcaccggaagttcgttttcacatcgatagcgagacacacgacccagtggatcttcaaacaaaggaacttaaggaaaccaactctcttgttgaggagttcatgttgctggccaatatttctgtggcgaagaaaatctttcaacaattcccagagtttgctcttttaagaaggcacccttcaccacctcccgccaactacgatgtcttggtgaaggctgctctctcaaagggattccatatcgacgtggatagcgctaagtccctcgcaacatccttggaatccgctcatattccggacgagccatacttcaacacacttcttcgtatcatggcaacgcgtagcatgatgcaagcgctttacttctgttcgggcatgctcggtgaagaagacttccttcattatggtttggcgactccaatctacacgcattttacttctcctatcagaagatattccgacatcatggttcaccgtttgttagcggtcgccattggtgcattcggttcataccccgatcttctaaacaaagacaagacgcagaaactctgtaatcatctgaatttccgtcacagaatggcccagtatgcatctcgggactccattgacttgcattgccagctgtttttccaaagtaaggcgataacagaggaagaagcattcgttctttttgtccgtaagaatgcgattcaagttttaattccaaagtatggactggagggaacagttttcatggcaaaagatgcgacaggagttgtgttcaacgaagaggaaccgtctctcaaaattggtgacgtcacctatagattgtttgaccgagtgttggtgaaaataaacgtcaacaagtcgtcaacggaaaacaagtttttatcgttcagccttatttcgagaaaggaaaacagtgtaggtgatggtgaagaaccactctctaaaaaagcgaagcttagttaa

Transcript

g11503.t1

ATGTTATTGGTGTGTTTGTTTGCACATGCAGCTCAGGAGTATGTTGAAAGCTTTGAAGGATGTGAGGGATTAGCAGACCGACTGGCACTCCAGACTGAAACTGGACAAGATCAGGTAGATGACAAGAAAAGGGGAAAGCTGGTTTATCCTGAGCACCTTCCTCTCACAAGAATTCAAGCTGGACTCAAAGGTGGAAGGTATCTTCAGGGTACTTTTCACCGAAGTAGGGAAAACTATACTGAAGCTTATGTCTTTGTGCACAATGGAGATAAGCAGGTGTTCATTCAAAGTCTAATGAATCTCAACCGTGCAGTTCATGAGGATATTGTTGCAGTTGAGATCTTGCCGAAAAGTCAGTGGACTTGTCCATCATCTGTTGTCACCACAACATTGACTGAAAATGACaaggaagatgatgatgatgatgatgatgatgatgatgaagatgttGATAAAAATAATGACCATCTGAAGTTGAATGGAGGCAGCAAAAACAAGGTGCTATCAGGAAAAGTTATTGGAATCATAAAGAGGAACTGGCGACCATATTGTGGTGTCCTTTCCAAGTCGTCAAAACCACAGgGTACGAGACATCTGTTCATAGCTGCTGAGAGAAGAATTCCCAGGGTCACCATTGAAACTAGACAAGCGTCAGCCCTAGAAGGGCAGAGAATTGTGGTTAGCATTGACTCTTGGCCTCAGAATTCTAAATATCCTGTGGGTCACTTTGTCCGAAAGCTGGGGGCCATTGGTGACAAGGAAACCGAGAACGAAGTGTTGCTTTTAGAGCGAGATGTGCCACACTTGCCTTTCTCAGCTGCAGTACAAAAGGACCTTCCCGTCATGCCATGGGCCATCACGGATGAGGATATGGAAAGTCGTTTGGATCTTCGCCATGTTGCAGTTTGTAGCATTGATCCTCCTGGTTGTACGGATATCGATGATGCTTTGCACTGGAGATTACTGGAGAGTGGAAATTATGAGGTTGGTGTGCATATAGCTGATGTGACACATTTTATCAGACCAGGGACATCTCTGGATGATGAAGCAGCCAATAGGGGTACCACAGTCTATCTCACGGATAAGCGAATTGACATGGTACCTGGTCTTCTCAGCTCAGATCTTTGTTCTTTGAGATGCAATGTTGACAGACTGGCGTTTTCCTGCATATGGCAAATGACTCCACAAGCTGAGATTGTCTCAACAAAGTTCACAAAAAGTATTATCTGCTCAAGGATGTCCTTCACATATGCTGAAGCTCAAATGCGAATTGATGATCCAAGTCAAAAGGACGAAATCACAGTGAGTCTCAGGCATCTCAACGAGCTCGCAAAGATCTTGAAAGGAAGGAGAATTGAGCAGGGGGCTCTGACTCTTGCGTCACCGGAAGTTCGTTTTCACATCGATAGCGAGACACACGACCCAGTGGATCTTCAAACAAAGGAACTTAAGGAAACCAACTCTCTTGTTGAGGAGTTCATGTTGCTGGCCAATATTTCTGTGGCGAAGAAAATCTTTCAACAATTCCCAGAGTTTGCTCTTTTAAGAAGGCACCCTTCACCACCTCCCGCCAACTACGATGTCTTGGTGAAGGCTGCTCTCTCAAAGGGATTCCATATCGACGTGGATAGCGCTAAGTCCCTCGCAACATCCTTGGAATCCGCTCATATTCCGGACGAGCCATACTTCAACACACTTCTTCGTATCATGGCAACGCGTAGCATGATGCAAGCGCTTTACTTCTGTTCGGGCATGCTCGGTGAAGAAGACTTCCTTCATTATGGTTTGGCGACTCCAATCTACACGCATTTTACTTCTCCTATCAGAAGATATTCCGACATCATGGTTCACCGTTTGTTAGCGGTCGCCATTGGTGCATTCGGTTCATACCCCGATCTTCTAAACAAAGACAAGACGCAGAAACTCTGTAATCATCTGAATTTCCGTCACAGAATGGCCCAGTATGCATCTCGGGACTCCATTGACTTGCATTGCCAGCTGTTTTTCCAAAGTAAGGCGATAACAGAGGAAGAAGCATTCGTTCTTTTTGTCCGTAAGAATGCGATTCAAGTTTTAATTCCAAAGTATGGACTGGAGGGAACAGTTTTCATGGCAAAAGATGCGACAGGAGTTGTGTTCAACGAAGAGGAACCGTCTCTCAAAATTGGTGACGTCACCTATAGATTGTTTGACCGAGTGTTGGTGAAAATAAACGTCAACAAGTCGTCAACggaaaacaagtttttatcgttCAGCCTTATTTCGAGAAAGGAAAACAGTGTAGGTGATGGTGAAGAACCACTCTCTAAAAAAGCGAAGCTTAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2L1	Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2
Q9CSH3	Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4
Q17632	Probable exosome complex exonuclease RRP44 OS=Caenorhabditis elegans OX=6239 GN=dis-3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001458 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17849 all species →	OB_Dis3	Dis3-like cold-shock domain 2 (CSD2)	Domain	Interproscan
PF17216 all species →	Rrp44_CSD1	Rrp44-like cold shock domain	Domain	Interproscan
PF17215 all species →	Rrp44_S1	S1 domain	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR041505 all species →	Domain	Dis3-like cold-shock domain 2	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR033771 all species →	Domain	Rrp44-like cold shock domain	Interproscan
IPR033770 all species →	Domain	Exosome complex exonuclease RRP44, S1 domain	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000176 all species →	Cellular Component	nuclear exosome (RNase complex)	Interproscan
GO:0000177 all species →	Cellular Component	cytoplasmic exosome (RNase complex)	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0016075 all species →	Biological Process	rRNA catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g11503.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.