Detailed information of g1151.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: HIL76465.1, YdiU family protein [Rhodospirillales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B3PTN1Protein nucleotidyltransferase YdiU OS=Rhizobium etli (strain CIAT 652) OX=491916 GN=ydiU PE=3 SV=1
Q2KAV8Protein nucleotidyltransferase YdiU OS=Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42) OX=347834 GN=ydiU PE=3 SV=2
Q1MJK8Protein nucleotidyltransferase YdiU OS=Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841) OX=216596 GN=ydiU PE=3 SV=1
Gene familySubfamily
Transcription Factors Familyzf-BED
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628PHDPHD-fingerDomainInterproscan
PF02696SelOProtein adenylyltransferase SelOFamilyInterproscan
PF00134Cyclin_NCyclin, N-terminal domainDomainInterproscan
PF21797CycT2-like_CCyclin-T2-like, C-terminal domainDomainInterproscan
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF15926RNF220E3 ubiquitin-protein ligase RNF220FamilyInterproscan
PF00059Lectin_CLectin C-type domainDomainInterproscan
PF02892zf-BEDBED zinc fingerDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF08403AA_permease_NAmino acid permease N-terminalFamilyInterproscan
PF00324AA_permeaseAmino acid permeaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR028938FamilyRemodeling and spacing factor 1-likeInterproscan
IPR003846FamilyProtein adenylyltransferase SelOInterproscan
IPR006671DomainCyclin, N-terminalInterproscan
IPR043198FamilyCyclin/Cyclin-like subunit Ssn8Interproscan
IPR036915Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR013763DomainCyclin-like domainInterproscan
IPR052443FamilyE3 ubiquitin-protein ligase RNF220-likeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR031824DomainE3 ubiquitin-protein ligase RNF220, middle domainInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR001304DomainC-type lectin-likeInterproscan
IPR050111FamilyC-type lectin and snaclec domain-containing proteinInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR003656DomainZinc finger, BED-typeInterproscan
IPR052717FamilyVacuolar processing and transposase activity regulatorsInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR004842FamilySLC12A transporter familyInterproscan
IPR013612DomainAmino acid permease, N-terminalInterproscan
IPR004841DomainAmino acid permease/ SLC12A domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR35842SI:CH211-67E16.11Interproscan
PTHR14296REMODELING AND SPACING FACTOR 1Interproscan
PTHR32057PROTEIN ADENYLYLTRANSFERASE SELO, MITOCHONDRIALInterproscan
PTHR10026CYCLINInterproscan
PTHR13459UNCHARACTERIZEDInterproscan
PTHR22803MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATEDInterproscan
PTHR46169DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM AInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11827SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0031213Cellular ComponentRSF complexInterproscan
GO:0018117Biological Processprotein adenylylationInterproscan
GO:0070733Molecular FunctionAMPylase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008024Cellular Componentcyclin/CDK positive transcription elongation factor complexInterproscan
GO:0016538Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activityInterproscan
GO:0032786Biological Processpositive regulation of DNA-templated transcription, elongationInterproscan
GO:0061575Molecular Functioncyclin-dependent protein serine/threonine kinase activator activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0038023Molecular Functionsignaling receptor activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0006884Biological Processcell volume homeostasisInterproscan
GO:0008511Molecular Functionsodium:potassium:chloride symporter activityInterproscan
GO:0015377Molecular Functionchloride:monoatomic cation symporter activityInterproscan
GO:0015379Molecular Functionpotassium:chloride symporter activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0055064Biological Processchloride ion homeostasisInterproscan
GO:0055075Biological Processpotassium ion homeostasisInterproscan
GO:0055078Biological Processsodium ion homeostasisInterproscan
GO:1902476Biological Processchloride transmembrane transportInterproscan
GO:1990573Biological Processpotassium ion import across plasma membraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23326CCNK; cyclin K-Chromosome and associated proteinsko03036deepkoala
Ubiquitin systemko04121deepkoala
Transcription machineryko03021deepkoala

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