Gene detail

Detailed information of g11537.t1 in Montipora capitata

Genomic Location: Sc0000348:188551...213178
NR annotation: XP_029192906.2, LOW QUALITY PROTEIN: alpha-aminoadipic semialdehyde synthase, mitochondrial-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11537.t1

atggcgattaggcgggaagatatcaatgtatgggaacgacgagctccgatcgcaccttcacatgtagctgaacttgttaacaagggaataaaagtgcttgtacagccttctacacgccgtgcttacaccatggacgaatacgagagggcaggaggcgtgatcacagaggatttatcgcctgcaagtttaattattggcgtaaaagctgtcccaatcgacttgcttataccaaacaagacttatgcgttcttttcgcacacgataaaagcacaagaggctaatatgccgcttttggatgcaatgttggaaaagaatattcgaattgttgactatgagaagatggtggatgctaaaggccaaagagtttgtgcctttggcaagtttgccggagttggaggaatgattaatattcttcacggacttggactcaggcttctagctcttggtcatcacacaccatttatgtacatgggtgcaacccataattataagaacagcagagcagccaaattggccatctatgaacttggagaggacatcaggggtggaaaattaccagcacattttggacctttgtcatttgtcttcactggttcaggaaacgtctcccagggagctcaggaaatgtttcaagaacttcctcacatctatgttgaacctgatgaattgaaaaaggcaattcagagcactgatcatcgcaaagtcatcggtacggtggtgagtcgtgaagactaccttgtacctaaagctggaggtggcatttttgatgcagaggaatatgatgcacatccagatagatacaggtctacatttgctgaaaagattgcaccttacatgagtgttctggtaaacggcacctactgggcacctcacgttccacgccttcttacttatggtgatgcaagaaacttgctaaggacaatgaagagatcaagtgcatatgaaggctgtcctagccttccacaaagattactggccatttgcgacatatctgcagattgtgatggttctttagaattcatgacggagtgtactacaatcgaatatccatttcacttatacaatattaagtcaggcacctcacagattggaatggctggtgatggagttctcatttgctccattgataatcttcctgctcagttgccacgagaagccacagattattttggcaagttattggtaccatggctgcaggaaatgattgattcacatgcaacagctccatttgaagaacagcatcacttgtcagacacggttaggaatgccattattacttcaaatggggagcttacaccaagctacgaatacattgccgatttgagaaaaagccaggaagaagccaaagctcgggcattaggaccaaacgtgaccataccagtcaaacaaaaggtccttttgcttgggtctgggtttactgtggcaccgtgtgttgagtatctgacaaaggacaagagtgttgccgtcacaatcgcctctgatcagatcagtgaggcggaaattttagcttccaaatataagaacacgtatccaactctacttgacgtcacacattcggaagacaagttgaacagattgattcagcgacatgatgtggtaataagcgcggttgatgctggagtagcaattgtgaacgaagtgggactggatcctggtatcgatcatttgctagcgatggaatgctttgatgactcgaaggacgagggtgcagtgataaaatcatttcgttcatattgtggtggccttcctgctccggagcatgccgataatcctcttagatataagttcagctggagtccaagagctggtcttctcaccatcatgaacactgccaaatatctctggtatggaaagactgtcgaaatagcagcgggtggcgctttacttaaagaaatcaaacctacggacatgtttccgggctacaggctggaatgccatccgaacagggactcgattatatacggcgaactatacggcattgccacagccaacacgatactgcgagggaccctgcgatatgagggctatgcgacagcgtgttcagctttatttcaacttggaatgtacagtcaggctgaacgatcagaccttgccgtggctcaagaacaaccttggaaaaaggtcttggccaaacttgtgggcagacctgacgcgggtgattcagagctccattcggttgtgtttgatttggttggaaaagactcggtccgcatgcaggccataaaggaccttggacttctttcggaagagcctgttctgcaacacaagactcctttggacacgctttgtttgtatctcactgacaaactcgcttacagagaaggtgagcgagacatggttttacttcaacatgatattgaattggagatgcctgacaaatcacagcttaaccgtcgaattgacttaatttgttacggtgatccgaatggtcattcagccatggcgcgcactgttgggcttcctgtggcgattgcgaccaagatggtgctagacggagacttaaaagctactggcgtggtccgacccctgaatcgtgaaatttataaaccgatgctcacacgactcaaagccgaaggaatttacagcgaattgaccacaacggtgttatga

Transcript

g11537.t1

ATGGCGATTAGGCGGGAAGATATCAATGTATGGGAACGACGAGCTCCGATCGCACCTTCACATGTAGCTGAACTTGTTAACAAGGGAATAAAAGTGCTTGTACAGCCTTCTACACGCCGTGCTTACACCATGGACGAATACGAGAGGGCAGGAGGCGTGATCACAGAGGATTTATCGCCTGCAAGTTTAATTATTGGCGTAAAAGCTGTCCCAATCGACTTGCTTATACCAAACAAGACTTATGCGTTCTTTTCGCACACGATAAAAGCACAAGAGGCTAATATGCCGCTTTTGGATGCAATGTTGGAAAAGAATATTCGAATTGTTGACTATGAGAAGATGGTGGATGCTAAAGGCCAAAGAGTTTGTGCCTTTGGCAAGTTTGCCGGAGTTGGAGGAATGATTAATATTCTTCACGGACTTGGACTCAGGCTTCTAGCTCTTGGTCATCACACACCATTTATGTACATGGGTGCAACCCATAATTATAAGAACAGCAGAGCAGCCAAATTGGCCATCTATGAACTTGGAGAGGACATCAGGGGTGGAAAATTACCAGCACATTTTGGACCTTTGTCATTTGTCTTCACTGGTTCAGGAAACGTCTCCCAGGGAGCTCAGGAAATGTTTCAAGAACTTCCTCACATCTATGTTGAACCTGATGAATTGAAAAAGGCAATTCAGAGCACTGATCATCGCAAAGTCATCGGTACGGTGGTGAGTCGTGAAGACTACCTTGTACCTAAAGCTGGAGGTGGCATTTTTGATGCAGAGGAATATGATGCACATCCAGATAGATACAGGTCTACATTTGCTGAAAAGATTGCACCTTACATGAGTGTTCTGGTAAACGGCACCTACTGGGCACCTCACGTTCCACGCCTTCTTACTTATGGTGATGCAAGAAACTTGCTAAGGACAATGAAGAGATCAAGTGCATATGAAGGCTGTCCTAGCCTTCCACAAAGATTACTGGCCATTTGCGACATATCTGCAGATTGTGATGGTTCTTTAGAATTCATGACGGAGTGTACTACAATCGAATATCCATTTCACTTATACAATATTAAGTCAGGCACCTCACAGATTGGAATGGCTGGTGATGGAGTTCTCATTTGCTCCATTGATAATCTTCCTGCTCAGTTGCCACGAGAAGCCACAGATTATTTTGGCAAGTTATTGGTACCATGGCTGCAGGAAATGATTGATTCACATGCAACAGCTCCATTTGAAGAACAGCATCACTTGTCAGACACGGTTAGGAATGCCATTATTACTTCAAATGGGGAGCTTACACCAAGCTACGAATACATTGCCGATTTGAGAAAAAGCCAGGAAGAAGCCAAAGCTCGGGCATTAGGACCAAACGTGACCATACCAGTCAAACAAAAGGTCCTTTTGCTTGGGTCTGGGTTTACTGTGGCACCGTGTGTTGAGTATCTGACAAAGGACAAGAGTGTTGCCGTCACAATCGCCTCTGATCAGATCAGTGAGGCGGAAATTTTAGCTTCCAAATATAAGAACACGTATCCAACTCTACTTGACGTCACACATTCGGAAGACAAGTTGAACAGATTGATTCAGCGACATGATGTGGTAAtaagCGCGGTTGATGCTGGAGTAGCAATTGTGAACGAAGTGGGACTGGATCCTGGTATCGATCATTTGCTAGCGATGGAATGCTTTGATGACTCGAAGGACGAGGGTGCAGTGATAAAATCATTTCGTTCATATTGTGGTGGCCTTCCTGCTCCGGAGCATGCCGATAATCCTCTTAGATATAAGTTCAGCTGGAGTCCAAGAGCTGGTCTTCTCACCATCATGAACACTGCCAAATATCTCTGGTATGGAAAGACTGTCGAAATAGCAGCGGGTGGCGCTTTACTTAAAGAAATCAAACCTACGGACATGTTTCCGGGCTACAGGCTGGAATGCCATCCGAACAGGGACTCGATTATATACGGCGAACTATACGGCATTGCCACAGCCAACACGATACTGCGAGGGACCCTGCGATATGAGGGCTATGCGACAGCGTGTTCAGCTTTATTTCAACTTGGAATGTACAGTCAGGCTGAACGATCAGACCTTGCCGTGGCTCAAGAACAACCTTGGAAAAAGGTCTTGGCCAAACTTGTGGGCAGACCTGACGCGGGTGATTCAGAGCTCCATTCGGTTGTGTTTGATTTGGTTGGAAAAGACTcggtccgcatgcaggccataAAGGAcCTTGGACTTCTTTCGGAAGAGCCTGTTCTGCAACACAAGACTCCTTTGGACACGCTTTGTTTGTATCTCACTGACAAACTCGCTTACAGAGAAGGTGAGCGAGACATGGTTTTACTTCAACATGATATTGAATTGGAGATGCCTGACAAATCACAGCTTAACCGTCGAATTGACTTAATTTGTTACGGTGATCCGAATGGTCATTCAGCCATGGCGCGCACTGTTGGGCTTCCTGTGGCGATTGCGACCAAGATGGTGCTAGACGGAGACTTAAAAGCTACTGGCGTGGTCCGACCCCTGAATCGTGAAATTTATAAACCGATGCTCACACGACTCAAAGCCGAAGGAATTTACAGCGAATTGACCACAACGGTGTTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8E657	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Bos taurus OX=9913 GN=AASS PE=2 SV=1
Q99K67	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Mus musculus OX=10090 GN=Aass PE=1 SV=1
Q9UDR5	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens OX=9606 GN=AASS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003890 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05222 all species →	AlaDh_PNT_N	Alanine dehydrogenase/PNT, N-terminal domain	Domain	Interproscan
PF01488 all species →	Shikimate_DH	Shikimate / quinate 5-dehydrogenase	Family	Interproscan
PF16653 all species →	Sacchrp_dh_C	Saccharopine dehydrogenase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007886 all species →	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal	Interproscan
IPR006151 all species →	Domain	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	Interproscan
IPR051168 all species →	Family	Alpha-aminoadipic semialdehyde synthase	Interproscan
IPR032095 all species →	Domain	Saccharopine dehydrogenase-like, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR007698 all species →	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11133 all species →	SACCHAROPINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004753 all species →	Molecular Function	saccharopine dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019878 all species →	Biological Process	lysine biosynthetic process via aminoadipic acid	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14157	AASS; alpha-aminoadipic semialdehyde synthase	EC:1.5.1.8 EC:1.5.1.9	Lysine degradation	ko00310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11537.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

41.9Max TPM

16.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	16.38	35.42
whole organisms · low pH treatment	15	15	17.99	41.85
whole organisms · extra low pH treatment pH treatment	12	12	16.20	36.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	35.42
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	34.77
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	34.63
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	21.64
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	21.33
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	20.66
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	17.34
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	16.73
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	15.75
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	15.51
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	15.05
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	14.87
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	14.82
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	13.86
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	12.47
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	9.78
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	8.03
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	6.67
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.78
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.27
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	3.55
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	41.85
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	38.62
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	37.56
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	18.05
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	16.58
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	16.13
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	15.92
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	15.77
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	14.18
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	12.01
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	11.62
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	10.51
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	7.50
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	7.03
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.45
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	36.24
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	31.62
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	18.28
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	17.92
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	16.47
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	15.08
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	14.11
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	13.34
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	13.34
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	7.80
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	5.71
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.53

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.