Gene detail

Detailed information of g1154.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_211828472.1, malate synthase G [Kistimonas asteriae]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B7V467	Malate synthase G OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=glcB PE=3 SV=1
Q02TT1	Malate synthase G OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=glcB PE=3 SV=1
Q9I636	Malate synthase G OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=glcB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)
Orthogroup (gene family)	OG0001029 (this species only)
Orthogroup (gene family)	OG0001351 (this species only)
Orthogroup (gene family)	OG0001584 (this species only)
Orthogroup (gene family)	OG0001758 (this species only)
Orthogroup (gene family)	OG0001776 (this species only)
Orthogroup (gene family)	OG0001932 (this species only)
Orthogroup (gene family)	OG0005649 (this species only)
Orthogroup (gene family)	OG0013295 (this species only)
Orthogroup (gene family)	OG0039532 (this species only)
Orthogroup (gene family)	OG0080597 (this species only)
Orthogroup (gene family)	OG0172811 (this species only)
Orthogroup (gene family)	OG0173480 (this species only)
Orthogroup (gene family)	OG0173804 (this species only)
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF21797 all species →	CycT2-like_C	Cyclin-T2-like, C-terminal domain	Domain	Interproscan
PF21772 all species →	CATIP_N	Ciliogenesis-associated TTC17-interacting protein, N-terminal domain	Domain	Interproscan
PF00248 all species →	Aldo_ket_red	Aldo/keto reductase family	Domain	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan
PF13360 all species →	PQQ_2	PQQ-like domain	Repeat	Interproscan
PF01011 all species →	PQQ	PQQ enzyme repeat	Repeat	Interproscan
PF20656 all species →	MS_N	Malate synthase, N-terminal domain	Domain	Interproscan
PF20659 all species →	MS_C	Malate synthase, C-terminal	Domain	Interproscan
PF01274 all species →	MS_TIM-barrel	Malate synthase, TIM barrel domain	Domain	Interproscan
PF20658 all species →	MSG_insertion	Malate synthase G, alpha-beta insertion domain	Domain	Interproscan
PF19423 all species →	E3_UBR4_N	E3 ubiquitin-protein ligase UBR4 N-terminal	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR053134 all species →	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR043198 all species →	Family	Cyclin/Cyclin-like subunit Ssn8	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR047501 all species →	Domain	Ciliogenesis-associated TTC17-interacting protein, dimerization/docking domain	Interproscan
IPR048777 all species →	Domain	Ciliogenesis-associated TTC17-interacting protein, N-terminal domain	Interproscan
IPR036812 all species →	Homologous_superfamily	NADP-dependent oxidoreductase domain superfamily	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR020471 all species →	Family	Aldo-keto reductase	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR023210 all species →	Domain	NADP-dependent oxidoreductase domain	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR006253 all species →	Family	Malate synthase G	Interproscan
IPR048356 all species →	Domain	Malate synthase, N-terminal domain	Interproscan
IPR048355 all species →	Domain	Malate synthase, C-terminal domain	Interproscan
IPR001465 all species →	Domain	Malate synthase, TIM barrel domain	Interproscan
IPR044856 all species →	Homologous_superfamily	Malate synthase, C-terminal superfamily	Interproscan
IPR046363 all species →	Homologous_superfamily	Malate synthase, N-terminal and TIM-barrel domains	Interproscan
IPR048357 all species →	Domain	Malate synthase G, alpha-beta insertion domain	Interproscan
IPR011076 all species →	Homologous_superfamily	Malate synthase superfamily	Interproscan
IPR047509 all species →	Domain	E3 ubiquitin-protein ligase UBR4-like, UBR-box	Interproscan
IPR045189 all species →	Family	E3 ubiquitin ligase UBR4-like	Interproscan
IPR045841 all species →	Domain	E3 ubiquitin-protein ligase UBR4, N-terminal	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR051074 all species →	Family	Sorting Nexin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559 all species →	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan
PTHR43520 all species →	ATP7, ISOFORM B	Interproscan
PTHR10026 all species →	CYCLIN	Interproscan
PTHR15505 all species →	RIIA DOMAIN-CONTAINING PROTEIN 1	Interproscan
PTHR43827 all species →	2,5-DIKETO-D-GLUCONIC ACID REDUCTASE	Interproscan
PTHR42739 all species →	MALATE SYNTHASE G	Interproscan
PTHR21725 all species →	E3 UBIQUITIN-PROTEIN LIGASE UBR4	Interproscan
PTHR45963 all species →	RE52028P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015677 all species →	Biological Process	copper ion import	Interproscan
GO:0043682 all species →	Molecular Function	P-type divalent copper transporter activity	Interproscan
GO:0055070 all species →	Biological Process	copper ion homeostasis	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008024 all species →	Cellular Component	cyclin/CDK positive transcription elongation factor complex	Interproscan
GO:0016538 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0032786 all species →	Biological Process	positive regulation of DNA-templated transcription, elongation	Interproscan
GO:0061575 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activator activity	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0044782 all species →	Biological Process	cilium organization	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004474 all species →	Molecular Function	malate synthase activity	Interproscan
GO:0006097 all species →	Biological Process	glyoxylate cycle	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009436 all species →	Biological Process	glyoxylate catabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0030904 all species →	Cellular Component	retromer complex	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0034499 all species →	Biological Process	late endosome to Golgi transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01638	aceB, glcB; malate synthase	EC:2.3.3.9	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala
K02916	RP-L35, MRPL35, rpmI; large subunit ribosomal protein L35	-	Ribosome	ko03011	deepkoala
K15188	CCNT; cyclin T	-	Transcription machinery	ko03021	deepkoala
K17686	copA, ctpA, ATP7; P-type Cu+ transporter	EC:7.2.2.8	Platinum drug resistance	ko01524	deepkoala
K17918	SNX3_12; sorting nexin-3/12	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala
K25788	CATIP; ciliogenesis-associated TTC17-interacting protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.