Detailed information of g1154.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_211828472.1, malate synthase G [Kistimonas asteriae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B7V467Malate synthase G OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=glcB PE=3 SV=1
Q02TT1Malate synthase G OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=glcB PE=3 SV=1
Q9I636Malate synthase G OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=glcB PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|UBR-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00027cNMP_bindingCyclic nucleotide-binding domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00702Hydrolasehaloacid dehalogenase-like hydrolaseDomainInterproscan
PF21797CycT2-like_CCyclin-T2-like, C-terminal domainDomainInterproscan
PF21772CATIP_NCiliogenesis-associated TTC17-interacting protein, N-terminal domainDomainInterproscan
PF00248Aldo_ket_redAldo/keto reductase familyDomainInterproscan
PF13621Cupin_8Cupin-like domainDomainInterproscan
PF13360PQQ_2PQQ-like domainRepeatInterproscan
PF01011PQQPQQ enzyme repeatRepeatInterproscan
PF20656MS_NMalate synthase, N-terminal domainDomainInterproscan
PF20659MS_CMalate synthase, C-terminalDomainInterproscan
PF01274MS_TIM-barrelMalate synthase, TIM barrel domainDomainInterproscan
PF20658MSG_insertionMalate synthase G, alpha-beta insertion domainDomainInterproscan
PF19423E3_UBR4_NE3 ubiquitin-protein ligase UBR4 N-terminalDomainInterproscan
PF00787PXPX domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000595DomainCyclic nucleotide-binding domainInterproscan
IPR018490Homologous_superfamilyCyclic nucleotide-binding domain superfamilyInterproscan
IPR014710Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR053134FamilyRNA-directed DNA polymerase homologInterproscan
IPR001757FamilyP-type ATPaseInterproscan
IPR023214Homologous_superfamilyHAD superfamilyInterproscan
IPR036412Homologous_superfamilyHAD-like superfamilyInterproscan
IPR043198FamilyCyclin/Cyclin-like subunit Ssn8Interproscan
IPR036915Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR047501DomainCiliogenesis-associated TTC17-interacting protein, dimerization/docking domainInterproscan
IPR048777DomainCiliogenesis-associated TTC17-interacting protein, N-terminal domainInterproscan
IPR036812Homologous_superfamilyNADP-dependent oxidoreductase domain superfamilyInterproscan
IPR003347DomainJmjC domainInterproscan
IPR020471FamilyAldo-keto reductaseInterproscan
IPR011047Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR023210DomainNADP-dependent oxidoreductase domainInterproscan
IPR018391RepeatPyrrolo-quinoline quinone beta-propeller repeatInterproscan
IPR041667DomainCupin-like domain 8Interproscan
IPR002372RepeatPyrrolo-quinoline quinone repeatInterproscan
IPR006253FamilyMalate synthase GInterproscan
IPR048356DomainMalate synthase, N-terminal domainInterproscan
IPR048355DomainMalate synthase, C-terminal domainInterproscan
IPR001465DomainMalate synthase, TIM barrel domainInterproscan
IPR044856Homologous_superfamilyMalate synthase, C-terminal superfamilyInterproscan
IPR046363Homologous_superfamilyMalate synthase, N-terminal and TIM-barrel domainsInterproscan
IPR048357DomainMalate synthase G, alpha-beta insertion domainInterproscan
IPR011076Homologous_superfamilyMalate synthase superfamilyInterproscan
IPR047509DomainE3 ubiquitin-protein ligase UBR4-like, UBR-boxInterproscan
IPR045189FamilyE3 ubiquitin ligase UBR4-likeInterproscan
IPR045841DomainE3 ubiquitin-protein ligase UBR4, N-terminalInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR003126DomainZinc finger, UBR-typeInterproscan
IPR036871Homologous_superfamilyPX domain superfamilyInterproscan
IPR001683DomainPhox homologyInterproscan
IPR051074FamilySorting NexinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINInterproscan
PTHR43520ATP7, ISOFORM BInterproscan
PTHR10026CYCLINInterproscan
PTHR15505RIIA DOMAIN-CONTAINING PROTEIN 1Interproscan
PTHR438272,5-DIKETO-D-GLUCONIC ACID REDUCTASEInterproscan
PTHR42739MALATE SYNTHASE GInterproscan
PTHR21725E3 UBIQUITIN-PROTEIN LIGASE UBR4Interproscan
PTHR45963RE52028PInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005215Molecular Functiontransporter activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0005507Molecular Functioncopper ion bindingInterproscan
GO:0005802Cellular Componenttrans-Golgi networkInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0015677Biological Processcopper ion importInterproscan
GO:0043682Molecular FunctionP-type divalent copper transporter activityInterproscan
GO:0055070Biological Processcopper ion homeostasisInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008024Cellular Componentcyclin/CDK positive transcription elongation factor complexInterproscan
GO:0016538Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activityInterproscan
GO:0032786Biological Processpositive regulation of DNA-templated transcription, elongationInterproscan
GO:0061575Molecular Functioncyclin-dependent protein serine/threonine kinase activator activityInterproscan
GO:0030041Biological Processactin filament polymerizationInterproscan
GO:0044782Biological Processcilium organizationInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004474Molecular Functionmalate synthase activityInterproscan
GO:0006097Biological Processglyoxylate cycleInterproscan
GO:0000287Molecular Functionmagnesium ion bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0009436Biological Processglyoxylate catabolic processInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0030904Cellular Componentretromer complexInterproscan
GO:0031901Cellular Componentearly endosome membraneInterproscan
GO:0032266Molecular Functionphosphatidylinositol-3-phosphate bindingInterproscan
GO:0032456Biological Processendocytic recyclingInterproscan
GO:0034499Biological Processlate endosome to Golgi transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02916RP-L35, MRPL35, rpmI; large subunit ribosomal protein L35-Glyoxylate and dicarboxylate metabolismko00630deepkoala
Transcription machineryko03021deepkoala
Cilium and associated proteinsko03037deepkoala
Platinum drug resistanceko01524deepkoala
Domain-containing proteins not elsewhere classifiedko04990deepkoala
Ribosomeko03011deepkoala

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