Gene detail

Detailed information of g11549.t1 in Montipora capitata

Genomic Location: Sc0000349:67531...77122
NR annotation: XP_029191536.1, ubiquitin thioesterase Zranb1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11549.t1

atgccaaagaaagaagaaagtttaaagtgggcttgcgagtactgtacatacctaaactggcctcgctctccgaaatgtactttgtgctgcgctccaaggccaccgcaagtgattacgcaagaaactagaaaaccgcaaacttttagcgaagacatttatgaggctgcaagtagcgacaggattatctcgaatgatccactaatttgtacatccagaggcaaaaacacacaatcgccacaatttccggagcagacagatcgcgatgaaaacacgaaatggacctgttcctcttgtacatatgaaaactggcctcgttcgctacactgttccatgtgtcgcgcttcgaaactcaaatcagtaaaaaacggaaggcatttggagccaggaagcagtaacaaagatgcctctcgaagtggctctccaaaatcgccgggtcttgtcggtagcaacgggaggctcgactcgaaaacaataaataatgacaaaaacagagcacttgtgaagaatcataagtggacctgtccgcagtgtacttacgaaaactggccaaaaactcagaagtgtgctctttgtaagtgcgttaagccagccaaaacaaaaaacgaagaaatatttaaaaactcatctttggagaacaccaaaaggccatcaacatcaaagagaaggtctccaaactcgtctgttagtgaagccactttagaaatccaaacaactcacccaatgggggaacagattatttacgatatccctgcctcagaggatgttaatgacaatgaggaggtgttgcaaattcgcaatcgactcaaggattctgattggttgtggttgacagcttgtataggtgttgtggaaggcgaaacatcatccgtagatggttacttaagttctgggggtgatttatcaaggcagttaactagggaagactgtttggttttaaaccgtccaggagtgtttgaagttgggcacactcttgttcacttggcttttaaatttaagagggatgaactcatcaccatccttcttactcctgaagttacaggccatcatttacgccgtgtaccatgtatcgcatgccctgaactggcagcggatattaggaaacaaatgggacatacaataaggcaacgcaaaggagattggcgatgttattttttcactgatcaagttacttttgttttgccagctgaaatccaagacttcccagccagagtacaaagacaagtctttgatgatattctggacagagaagttcaaagagttttagaaattgagtctacagtgatcaattggagtgaagaaatcactgaacagttgggaagtaggatatatcctctgtggaatcgctctgctggtgactgtcttttagattcaatccttcaagcttcctatggagtgtttgacagagaaaacacattaagaagagccctgtatgacagtttaactgagggaggttctagattttttaacagatataaagagtgggaatccatgcaggcagaaacattgcagtattctctggatgaagaccagtgggagcaggactgggcttccattcttagcctggctggtcagcctggaacatctttggaacagacccatgtatttgccttggcccacattctgcgtagacctgtcatcatttatggcgtgaagtatgtcaaaagtttcaggggagaggtgcttgggcttgcgcgttttcaaggggtttatctacctgttttatgggaacaaagtttctgttggaagaatccattggtcctggggtatacgagaggtcacttttctgctttggtcgctatggaaactgacaattccaacgagcttggtgcaggagctaatgttgacagtgtagacagtgttcacgtgacttacttgccgttagtggactacgagggcaaacttcttcctgttcacttcctctcagccgaagagcggggcagtgaggagcgtttgttacgtgagtggcttgactgctgtgtcacagagggtggaatcttagtggcacaacagaaagtatcttcaagaccagcattgctcaaccagttgatagatgactggttagatcgctacaggaaactatgtaagagcaagtga

Transcript

g11549.t1

ATgccaaagaaagaagaaagttTAAAGTGGGCTTGCGAGTACTGTACATACCTAAACTGGCCTCGCTCTCCGAAATGTACTTTGTGCTGCGCTCCAAGGCCACCGCAAGTGATTACGCAAGAAACTAGAAAACCGCAAACTTTTAGCGAAGACATTTATGAGGCTGCAAGTAGCGACAGGATTATCTCGAATGATCCACTAATTTGTACATCCAGAGGCAAAAACACACAATCGCCACAATTTCCGGAGCAGACAGATCGCGATGAAAACACGAAATGGACCTGTTCCTCTTGTACATATGAAAACTGGCCTCGTTCGCTACACTGTTCCATGTGTCGCGCTTCGAAACTCAAATCAGTAAAAAACGGAAGGCATTTGGAGCCAGGAAGCAGTAACAAAGATGCCTCTCGAAGTGGCTCTCCAAAATCGCCGGGTCTTGTCGGTAGCAACGGGAGGCTCGACTCGAAAACAATAAATAATGACAAAAACAGAGCACTTGTGAAGAATCATAAGTGGACCTGTCCGCAGTGTACTTACGAAAACTGGCCAAAAACTCAGAAGTGTGCTCTTTGTAAGTGCGTTAAGCCAgccaaaacaaaaaacgaaGAAATATTTAAAAACTCATCTTTGGAGAACACCAAAAGGCCATCAACATCAAAGAGAAGGTCTCCAAACTCGTCTGTTAGTGAAGCCACTTTAGAAATCCAAACAACTCACCCAATGGGGGAACAGATTATTTACGATATCCCTGCCTCAGAGGATGTTAATGACAATGAGGAGGTGTTGCAAATTCGCAATCGACTCAaggattctgattggttgtggTTGACAGCTTGTATAGGTGTTGTGGAAGGCGAAACATCATCCGTAGATGGTTACTTAAGTTCTGGGGGTGATTTATCAAGGCAGTTAACTAGGGAAGACTGTTTGGTTTTAAACCGTCCAGGAGTGTTTGAAGTTGGGCACACTCTTGTTCACTTGGCTTTTAAATTTAAGAGGGATGAACTCATCACCATCCTTCTTACTCCTGAAGTTACAGGCCATCATTTACGCCGTGTACCATGTATCGCATGCCCTGAACTGGCAGCGGATATTAGGAAACAAATGGGACATACAATAAGGCAACGCAAAGGAGATTGGCGATGTTATTTTTTCACTGATCAAGTTACTTTTGTTTTGCCAGCTGaaatccaAGACTTCCCAGCCAGAGTACAAAGACAAGTCTTTGATGATATTCTGGACAGAGAAGTTCAAAGAGTTTTAGAAATTGAGTCTACAGTGATCAATTGGAGTGAAGAAATCACTGAACAGTTGGGAAGTAGGATATATCCTCTGTGGAATCGCTCTGCTGGTGACTGTCTTTTAGATTCAATCCTTCAAGCTTCCTATGGAGTGTTTGACAGAGAAAACACATTAAGAAGAGCCCTGTATGACAGTTTAACTGAGGGAGGTTCTAGATTTTTTAACAGATATAAAGAGTGGGAATCCATGCAGGCAGAAACATTGCAGTATTCTCTGGATGAAGACCAGTGGGAGCAGGACTGGGCTTCCATTCTTAGCCTGGCTGGTCAGCCTGGAACATCTTTGGAACAGACCCATGTATTTGCCTTGGCCCACATTCTGCGTAGACCTGTCATCATTTATGGCGTGAAGTATGTCAAAAGTTTCAGGGGAGAGGTGCTTGGGCTTGCGCGTTTTCAAGGGGTTTATCTACCTGTTTTATGGGAACAAAGTTTCTGTTGGAAGAATCCATTGGTCCTGGGGTATACGAGAGGTCACTTTTCTGCTTTGGTCGCTATGGAAACTGACAATTCCAACGAGCTTGGTGCAGGAGCTAATGTTGACAGTGTAGACAGTGTTCACGTGACTTACTTGCCGTTAGTGGACTACGAGGGCAAACTTCTTCCTGTTCACTTCCTCTCAGCCGAAGAGcgggGCAGTGAGGAGCGTTTGTTACGTGAGTGGCTTGACTGCTGTGTCACAGAGGGTGGAATCTTAGTGGCACAACAGAAAGTATCTTCAAGACCAGCATTGCTCAACCAGTTGATAGATGACTGGTTAGATCGCTACAGGAAActatgtaagagcaagtga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NUB7	Ubiquitin thioesterase zranb1-B OS=Xenopus laevis OX=8355 GN=zranb1-b PE=2 SV=1
B1H2Q2	Ubiquitin thioesterase zranb1 OS=Xenopus tropicalis OX=8364 GN=zranb1 PE=2 SV=1
Q5U595	Ubiquitin thioesterase zranb1-A OS=Xenopus laevis OX=8355 GN=zranb1-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009098 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan
PF18418 all species →	AnkUBD	Ankyrin ubiquitin-binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051346 all species →	Family	OTU Domain-Containing Deubiquitinase	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR049768 all species →	Domain	Ubiquitin thioesterase ZRANB1, ovarian tumor domain	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR041294 all species →	Domain	Ankyrin ubiquitin-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367 all species →	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0070530 all species →	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071947 all species →	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11862	ZRANB1, TRABID; ubiquitin thioesterase ZRANB1	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11549.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

328.0Max TPM

170.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	167.58	328.03
whole organisms · low pH treatment	15	15	175.16	306.70
whole organisms · extra low pH treatment pH treatment	12	12	170.51	313.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	328.03
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	313.19
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	305.36
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	296.30
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	284.83
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	277.18
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	263.60
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	262.64
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	261.98
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	223.76
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	207.57
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	73.59
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	69.82
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	64.22
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	60.55
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	50.07
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	46.72
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	39.43
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	31.74
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	30.75
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	27.77
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	306.70
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	305.36
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	295.72
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	266.92
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	266.43
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	239.62
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	214.43
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	209.54
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	194.48
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	60.49
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	59.09
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	55.47
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	55.38
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	53.74
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	43.99
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	313.26
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	283.50
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	262.87
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	250.53
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	233.89
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	225.28
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	192.16
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	71.64
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	63.92
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	58.03
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	49.05
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	42.01

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.