Detailed information of g116.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBL1406599.1, TAXI family TRAP transporter solute-binding subunit [Hyphomicrobiales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9NZW5Protein PALS2 OS=Homo sapiens OX=9606 GN=PALS2 PE=1 SV=2
D3ZAA9MAGUK p55 subfamily member 2 OS=Rattus norvegicus OX=10116 GN=Mpp2 PE=1 SV=2
Q14168MAGUK p55 subfamily member 2 OS=Homo sapiens OX=9606 GN=MPP2 PE=1 SV=3
Gene familySubfamily
Ubiquitin FamilyDUB|USP|USP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665rveIntegrase core domainDomainInterproscan
PF10150RNase_E_GRibonuclease E/G familyFamilyInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00852Glyco_transf_10Glycosyltransferase family 10 (fucosyltransferase) C-termFamilyInterproscan
PF16868NMT1_3NMT1-like familyFamilyInterproscan
PF00994MoCF_biosynthProbable molybdopterin binding domainDomainInterproscan
PF01507PAPS_reductPhosphoadenosine phosphosulfate reductase familyFamilyInterproscan
PF00443UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan
PF05026DCP2Dcp2, box A domainDomainInterproscan
PF00293NUDIXNUDIX domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00625Guanylate_kinGuanylate kinaseDomainInterproscan
PF00595PDZPDZ domainDomainInterproscan
PF00018SH3_1SH3 domainDomainInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF01267F-actin_cap_AF-actin capping protein alpha subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR019307FamilyRNA-binding protein AU-1/Ribonuclease E/GInterproscan
IPR004659FamilyRibonuclease E/GInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050496FamilySNF2/RAD54 Helicase and DNA RepairInterproscan
IPR001503FamilyGlycosyl transferase family 10Interproscan
IPR038577Homologous_superfamilyGT10-like, C-terminal domain superfamilyInterproscan
IPR011852FamilyTRAP transporter solute receptor, TAXI familyInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR001453DomainMoaB/Mog domainInterproscan
IPR036425Homologous_superfamilyMoaB/Mog-like domain superfamilyInterproscan
IPR002500DomainPhosphoadenosine phosphosulphate reductaseInterproscan
IPR018200Conserved_siteUbiquitin specific protease, conserved siteInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR028889DomainUbiquitin specific protease domainInterproscan
IPR050185FamilyUbiquitin carboxyl-terminal hydrolaseInterproscan
IPR001394DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR036189Homologous_superfamilymRNA decapping protein 2, Box A domain superfamilyInterproscan
IPR044099DomainmRNA decapping enzyme 2 , NUDIX hydrolase domainInterproscan
IPR015797Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan
IPR000086DomainNUDIX hydrolase domainInterproscan
IPR007722DomainmRNA decapping protein 2, Box A domainInterproscan
IPR020084Conserved_siteNUDIX hydrolase, conserved siteInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR001478DomainPDZ domainInterproscan
IPR020590Conserved_siteGuanylate kinase, conserved siteInterproscan
IPR001452DomainSH3 domainInterproscan
IPR008145DomainGuanylate kinase/L-type calcium channel beta subunitInterproscan
IPR050716FamilyMembrane-associated guanylate kinaseInterproscan
IPR008144DomainGuanylate kinase-like domainInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR002189FamilyF-actin-capping protein subunit alphaInterproscan
IPR037282Homologous_superfamilyF-actin-capping protein subunit alpha/betaInterproscan
IPR042276Homologous_superfamilyF-actin-capping protein subunit alpha/beta, domain 2Interproscan
IPR017865Conserved_siteF-actin capping protein, alpha subunit, conserved siteInterproscan
IPR042489Homologous_superfamilyF-actin capping protein, alpha subunit, domain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR46177INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEINInterproscan
PTHR30001RIBONUCLEASEInterproscan
PTHR45629SNF2/RAD54 FAMILY MEMBERInterproscan
PTHR11929ALPHA- 1,3 -FUCOSYLTRANSFERASEInterproscan
PTHR42941SLL1037 PROTEINInterproscan
PTHR23293FAD SYNTHETASE-RELATED FMN ADENYLYLTRANSFERASEInterproscan
PTHR21646UBIQUITIN CARBOXYL-TERMINAL HYDROLASEInterproscan
PTHR23114M7GPPPN-MRNA HYDROLASEInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23122MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUKInterproscan
PTHR24020COLLAGEN ALPHAInterproscan
PTHR10653F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004540Molecular FunctionRNA nuclease activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0015616Molecular FunctionDNA translocase activityInterproscan
GO:0006486Biological Processprotein glycosylationInterproscan
GO:0008417Molecular Functionfucosyltransferase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0036065Biological ProcessfucosylationInterproscan
GO:0046920Molecular Functionalpha-(1->3)-fucosyltransferase activityInterproscan
GO:0003919Molecular FunctionFMN adenylyltransferase activityInterproscan
GO:0006747Biological ProcessFAD biosynthetic processInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579Biological Processprotein deubiquitinationInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0030145Molecular Functionmanganese ion bindingInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0000290Biological Processdeadenylation-dependent decapping of nuclear-transcribed mRNAInterproscan
GO:0140933Molecular Function5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activityInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0050072Molecular Functionobsolete m7G(5')pppN diphosphatase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0005911Cellular Componentcell-cell junctionInterproscan
GO:0008290Cellular ComponentF-actin capping protein complexInterproscan
GO:0051016Biological Processbarbed-end actin filament cappingInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0030479Cellular Componentactin cortical patchInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01817trpF; phosphoribosylanthranilate isomeraseEC:5.3.1.24
Function unknown-deepkoala
Ubiquitin systemko04121deepkoala
Chromosome and associated proteinsko03036deepkoala
Riboflavin metabolismko00740deepkoala
Messenger RNA biogenesisko03019deepkoala
Mitochondrial biogenesisko03029deepkoala
Phenylalanine, tyrosine and tryptophan biosynthesisko00400deepkoala

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