Detailed information of g1160.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBT4289580.1, GAF domain-containing protein [Deltaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9KLR13'3'-cGAMP-specific phosphodiesterase 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=VC_A0681 PE=1 SV=1
Q9KL183'3'-cGAMP-specific phosphodiesterase 3 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=VC_A0931 PE=1 SV=1
Q4UU85Cyclic di-GMP phosphodiesterase response regulator RpfG OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=rpfG PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox
Transcription Factors FamilySRF

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00319SRF-TFSRF-type transcription factor (DNA-binding and dimerisation domain)DomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF00171AldedhAldehyde dehydrogenase familyFamilyInterproscan
PF13487HD_5HD domainDomainInterproscan
PF01966HDHD domainFamilyInterproscan
PF01590GAFGAF domainDomainInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033897DomainMADS SRF-likeInterproscan
IPR002100DomainTranscription factor, MADS-boxInterproscan
IPR036879Homologous_superfamilyTranscription factor, MADS-box superfamilyInterproscan
IPR050142FamilyMADS-box/MEF2 Transcription FactorInterproscan
IPR050649FamilyPaired Homeobox Transcription FactorsInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR000611FamilyNeuropeptide Y receptor familyInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR016163Homologous_superfamilyAldehyde dehydrogenase, C-terminalInterproscan
IPR016162Homologous_superfamilyAldehyde dehydrogenase, N-terminalInterproscan
IPR016161Homologous_superfamilyAldehyde/histidinol dehydrogenaseInterproscan
IPR015590DomainAldehyde dehydrogenase domainInterproscan
IPR003607DomainHD/PDEase domainInterproscan
IPR003018DomainGAF domainInterproscan
IPR037522DomainHD-GYP domainInterproscan
IPR006674DomainHD domainInterproscan
IPR029016Homologous_superfamilyGAF-like domain superfamilyInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR000849FamilySugar phosphate transporterInterproscan
IPR020846DomainMajor facilitator superfamily domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48019SERUM RESPONSE FACTOR HOMOLOGInterproscan
PTHR24329HOMEOBOX PROTEIN ARISTALESSInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45695LEUCOKININ RECEPTOR-RELATEDInterproscan
PTHR42804ALDEHYDE DEHYDROGENASEInterproscan
PTHR43155CYCLIC DI-GMP PHOSPHODIESTERASE PA4108-RELATEDInterproscan
PTHR43184MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0000987Molecular Functioncis-regulatory region sequence-specific DNA bindingInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004983Molecular Functionneuropeptide Y receptor activityInterproscan
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptorInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0030176Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03447SLC37A3; MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 3-Transcription factorsko03000deepkoala
Transportersko02000deepkoala

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