Detailed information of g1161.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCG8333825.1, hypothetical protein [Pseudomonadota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P30876DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1
A5PJW8DNA-directed RNA polymerase II subunit RPB2 OS=Bos taurus OX=9913 GN=POLR2B PE=1 SV=1
Q8CFI7DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyHomeobox
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00612IQIQ calmodulin-binding motifMotifInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF01363FYVEFYVE zinc fingerDomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan
PF00562RNA_pol_Rpb2_6RNA polymerase Rpb2, domain 6DomainInterproscan
PF04561RNA_pol_Rpb2_2RNA polymerase Rpb2, domain 2DomainInterproscan
PF04566RNA_pol_Rpb2_4RNA polymerase Rpb2, domain 4DomainInterproscan
PF04565RNA_pol_Rpb2_3RNA polymerase Rpb2, domain 3DomainInterproscan
PF04563RNA_pol_Rpb2_1RNA polymerase beta subunitFamilyInterproscan
PF04560RNA_pol_Rpb2_7RNA polymerase Rpb2, domain 7DomainInterproscan
PF04567RNA_pol_Rpb2_5RNA polymerase Rpb2, domain 5DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042815FamilyDynein regulatory complex protein 10Interproscan
IPR000048Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR000306DomainFYVE zinc fingerInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017455DomainZinc finger, FYVE-relatedInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR050649FamilyPaired Homeobox Transcription FactorsInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR050731FamilyHRD1 family E3 ubiquitin-protein ligasesInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR007120DomainDNA-directed RNA polymerase, subunit 2, hybrid-binding domainInterproscan
IPR015712FamilyDNA-directed RNA polymerase, subunit 2Interproscan
IPR007642DomainRNA polymerase Rpb2, domain 2Interproscan
IPR007646DomainRNA polymerase Rpb2, domain 4Interproscan
IPR037033Homologous_superfamilyDNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyInterproscan
IPR014724Homologous_superfamilyRNA polymerase Rpb2, OB-foldInterproscan
IPR007645DomainRNA polymerase Rpb2, domain 3Interproscan
IPR007644DomainRNA polymerase, beta subunit, protrusionInterproscan
IPR007641DomainRNA polymerase Rpb2, domain 7Interproscan
IPR007121Conserved_siteRNA polymerase, beta subunit, conserved siteInterproscan
IPR037034Homologous_superfamilyRNA polymerase Rpb2, domain 2 superfamilyInterproscan
IPR007647DomainRNA polymerase Rpb2, domain 5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31598IQ DOMAIN-CONTAINING PROTEIN DInterproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR46319ZINC FINGER FYVE DOMAIN-CONTAINING PROTEINInterproscan
PTHR24329HOMEOBOX PROTEIN ARISTALESSInterproscan
PTHR22763RING ZINC FINGER PROTEINInterproscan
PTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0016197Biological Processendosomal transportInterproscan
GO:0031901Cellular Componentearly endosome membraneInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001055Molecular FunctionRNA polymerase II activityInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0032549Molecular Functionribonucleoside bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10601SYVN1, HRD1; E3 ubiquitin-protein ligase synoviolinEC:2.3.2.27
DNA repair and recombination proteinsko03400deepkoala
Domain-containing proteins not elsewhere classifiedko04990deepkoala
Transcription factorsko03000deepkoala
Ubiquitin systemko04121deepkoala

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