Detailed information of g117.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBT7155150.1, chromosome segregation protein SMC [Deltaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q1D2R5Chromosome partition protein Smc OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=smc PE=1 SV=1
Q604U6Chromosome partition protein Smc OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=smc PE=3 SV=2
E1X022Chromosome partition protein Smc OS=Halobacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) OX=862908 GN=smc PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00307CHCalponin homology (CH) domainDomainInterproscan
PF00630FilaminFilamin/ABP280 repeatDomainInterproscan
PF14774FAM177FAM177 familyFamilyInterproscan
PF02463SMC_NRecF/RecN/SMC N terminal domainDomainInterproscan
PF13432TPR_16Tetratricopeptide repeatRepeatInterproscan
PF13549ATP-grasp_5ATP-grasp domainDomainInterproscan
PF13358DDE_3DDE superfamily endonucleaseDomainInterproscan
PF13592HTH_33Winged helix-turn helixDomainInterproscan
PF13551HTH_29Winged helix-turn helixDomainInterproscan
PF01012ETFElectron transfer flavoprotein domainDomainInterproscan
PF16034JAKMIP_CC3JAKMIP CC3 domainCoiled-coilInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF14826FACT-Spt16_NlobFACT complex subunit SPT16 N-terminal lobe domainDomainInterproscan
PF08644SPT16FACT complex subunit (SPT16/CDC68)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR017868RepeatFilamin/ABP280 repeat-likeInterproscan
IPR001298RepeatFilamin/ABP280 repeatInterproscan
IPR044801FamilyFilamin familyInterproscan
IPR028260FamilyFAM177 familyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR024704FamilyStructural maintenance of chromosomes proteinInterproscan
IPR011890FamilyStructural maintenance of chromosomes protein, prokaryoticInterproscan
IPR003395DomainRecF/RecN/SMC, N-terminalInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR039856FamilyER membrane protein complex subunit 2-likeInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR051538FamilyAcyl-CoA Synthetase/TransferaseInterproscan
IPR038717DomainTc1-like transposase, DDE domainInterproscan
IPR052338FamilyTransposase_5Interproscan
IPR025959DomainWinged helix-turn helix domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR047655FamilyTransposase IS630-likeInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR000049Conserved_siteElectron transfer flavoprotein, beta-subunit, conserved siteInterproscan
IPR014730DomainElectron transfer flavoprotein, alpha/beta-subunit, N-terminalInterproscan
IPR012255FamilyElectron transfer flavoprotein, beta subunitInterproscan
IPR033948DomainElectron transfer flavoprotein, beta subunit, N-terminalInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR031994DomainJanus kinase and microtubule-interacting protein, C-terminal domainInterproscan
IPR024836FamilyJanus kinase and microtubule-interacting proteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR029148DomainFACT complex subunit Spt16, N-terminal lobe domainInterproscan
IPR036005Homologous_superfamilyCreatinase/aminopeptidase-likeInterproscan
IPR013953DomainFACT complex subunit Spt16 domainInterproscan
IPR040258FamilyFACT complex subunit Spt16Interproscan
IPR029149Homologous_superfamilyCreatinase/Aminopeptidase P/Spt16, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR38537JITTERBUG, ISOFORM NInterproscan
PTHR43977STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3Interproscan
PTHR12760TETRATRICOPEPTIDE REPEAT PROTEINInterproscan
PTHR43334ACETATE--COA LIGASE [ADP-FORMING]Interproscan
PTHR23022TRANSPOSABLE ELEMENT-RELATEDInterproscan
PTHR21294ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNITInterproscan
PTHR18935UNCHARACTERIZEDInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR13980CDC68 RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0007062Biological Processsister chromatid cohesionInterproscan
GO:0030261Biological Processchromosome condensationInterproscan
GO:0034975Biological Processprotein folding in endoplasmic reticulumInterproscan
GO:0072546Cellular ComponentEMC complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0009055Molecular Functionelectron transfer activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0009063Biological Processamino acid catabolic processInterproscan
GO:0033539Biological Processfatty acid beta-oxidation using acyl-CoA dehydrogenaseInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0019900Molecular Functionkinase bindingInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0035101Cellular ComponentFACT complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K07494K07494; putative transposase-Energy metabolism-deepkoala
Membrane traffickingko04131deepkoala
Replication and repair-deepkoala

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