Detailed information of g1172.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: RMX44068.1, hypothetical protein pdam_00015034 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q14517Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV=2
Q9VW71Fat-like cadherin-related tumor suppressor homolog OS=Drosophila melanogaster OX=7227 GN=kug PE=2 SV=3
O88277Protocadherin Fat 2 OS=Rattus norvegicus OX=10116 GN=Fat2 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00008EGFEGF-like domainDomainInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan
PF00028CadherinCadherin domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF17849OB_Dis3Dis3-like cold-shock domain 2 (CSD2)DomainInterproscan
PF00773RNBRNB domainDomainInterproscan
PF00130C1_1Phorbol esters/diacylglycerol binding domain (C1 domain)DomainInterproscan
PF00017SH2SH2 domainDomainInterproscan
PF00620RhoGAPRhoGAP domainDomainInterproscan
PF14938SNAPSoluble NSF attachment protein, SNAPRepeatInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR039808FamilyCadherinInterproscan
IPR038071Homologous_superfamilyUROD/MetE-like superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR022966Conserved_siteRibonuclease II/R, conserved siteInterproscan
IPR041505DomainDis3-like cold-shock domain 2Interproscan
IPR001900DomainRibonuclease II/RInterproscan
IPR050180FamilyRNR RibonucleaseInterproscan
IPR000198DomainRho GTPase-activating protein domainInterproscan
IPR008936Homologous_superfamilyRho GTPase activation proteinInterproscan
IPR051854FamilyRho-type GTPase-activating proteinInterproscan
IPR000980DomainSH2 domainInterproscan
IPR002219DomainProtein kinase C-like, phorbol ester/diacylglycerol-binding domainInterproscan
IPR036860Homologous_superfamilySH2 domain superfamilyInterproscan
IPR046349Homologous_superfamilyC1-like domain superfamilyInterproscan
IPR020454DomainDiacylglycerol/phorbol-ester bindingInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR000744FamilyNSF attachment proteinInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24027CADHERIN-23Interproscan
PTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDInterproscan
PTHR23355RIBONUCLEASEInterproscan
PTHR46075CHIMERIN FAMILY MEMBERInterproscan
PTHR13768SOLUBLE NSF ATTACHMENT PROTEIN SNAPInterproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016342Cellular Componentcatenin complexInterproscan
GO:0045296Molecular Functioncadherin bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0098742Biological Processcell-cell adhesion via plasma-membrane adhesion moleculesInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004540Molecular FunctionRNA nuclease activityInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0006402Biological ProcessmRNA catabolic processInterproscan
GO:0010587Biological ProcessmiRNA catabolic processInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0043087Biological Processregulation of GTPase activityInterproscan
GO:0005483Molecular Functionsoluble NSF attachment protein activityInterproscan
GO:0005774Cellular Componentvacuolar membraneInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0019905Molecular Functionsyntaxin bindingInterproscan
GO:0031201Cellular ComponentSNARE complexInterproscan
GO:0035494Biological ProcessSNARE complex disassemblyInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20630CHN1_2, ARHGAP2_3; chimaerin-Cell adhesion moleculesko04515deepkoala
Membrane traffickingko04131deepkoala
Messenger RNA biogenesisko03019deepkoala
Membrane traffickingko04131deepkoala

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