Gene detail

Detailed information of g1173.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_004206470.3, uncharacterized protein LOC100207339 isoform X1 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NWF4	Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 PE=2 SV=2
Q6AX45	Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps25 PE=2 SV=1
Q9BRG1	Vacuolar protein-sorting-associated protein 25 OS=Homo sapiens OX=9606 GN=VPS25 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000296 (this species only)
Orthogroup (gene family)	OG0000996 (this species only)
Orthogroup (gene family)	OG0002841 (this species only)
Orthogroup (gene family)	OG0004174 (this species only)
Orthogroup (gene family)	OG0004664 (this species only)
Orthogroup (gene family)	OG0005680 (this species only)
Orthogroup (gene family)	OG0008224 (this species only)
Orthogroup (gene family)	OG0009049 (this species only)
Orthogroup (gene family)	OG0010937 (this species only)
Orthogroup (gene family)	OG0017064 (this species only)
Orthogroup (gene family)	OG0017422 (this species only)
Orthogroup (gene family)	OG0059520 (this species only)
Orthogroup (gene family)	OG0172065 (this species only)
Orthogroup (gene family)	OG0173875 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08449 all species →	UAA	UAA transporter family	Family	Interproscan
PF05871 all species →	ESCRT-II	ESCRT-II complex subunit	Family	Interproscan
PF00264 all species →	Tyrosinase	Common central domain of tyrosinase	Domain	Interproscan
PF04438 all species →	zf-HIT	HIT zinc finger	Domain	Interproscan
PF12926 all species →	MOZART2	Mitotic-spindle organizing gamma-tubulin ring associated	Family	Interproscan
PF04832 all species →	SOUL	SOUL heme-binding protein	Family	Interproscan
PF02412 all species →	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040141 all species →	Family	ZPR1 family	Interproscan
IPR042451 all species →	Homologous_superfamily	ZPR1, A/B domain	Interproscan
IPR013657 all species →	Family	SLC35B1-4/HUT1	Interproscan
IPR014041 all species →	Homologous_superfamily	ESCRT-II complex, Vps25 subunit, N-terminal winged helix	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR008570 all species →	Family	ESCRT-II complex, Vps25 subunit	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR052904 all species →	Family	Acyl-CoA dehydrogenase-like protein	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR002227 all species →	Domain	Tyrosinase copper-binding domain	Interproscan
IPR050316 all species →	Family	Tyrosinase and Hemocyanin	Interproscan
IPR008922 all species →	Homologous_superfamily	Di-copper centre-containing domain superfamily	Interproscan
IPR007529 all species →	Domain	Zinc finger, HIT-type	Interproscan
IPR039646 all species →	Family	Zinc finger HIT domain-containing protein 2	Interproscan
IPR024332 all species →	Family	MOZART2 family	Interproscan
IPR006917 all species →	Family	SOUL haem-binding protein	Interproscan
IPR011256 all species →	Homologous_superfamily	Regulatory factor, effector binding domain superfamily	Interproscan
IPR028974 all species →	Homologous_superfamily	TSP type-3 repeat	Interproscan
IPR003367 all species →	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR017897 all species →	Repeat	Thrombospondin, type 3 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10876 all species →	ZINC FINGER PROTEIN ZPR1	Interproscan
PTHR10778 all species →	SOLUTE CARRIER FAMILY 35 MEMBER B	Interproscan
PTHR13149 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25	Interproscan
PTHR42707 all species →	ACYL-COA DEHYDROGENASE	Interproscan
PTHR11474 all species →	TYROSINASE FAMILY MEMBER	Interproscan
PTHR15555 all species →	ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED	Interproscan
PTHR28578 all species →	MITOTIC-SPINDLE ORGANIZING PROTEIN 2A-RELATED	Interproscan
PTHR11220 all species →	HEME-BINDING PROTEIN-RELATED	Interproscan
PTHR10199 all species →	THROMBOSPONDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005459 all species →	Molecular Function	UDP-galactose transmembrane transporter activity	Interproscan
GO:0005460 all species →	Molecular Function	UDP-glucose transmembrane transporter activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0072334 all species →	Biological Process	UDP-galactose transmembrane transport	Interproscan
GO:0000814 all species →	Cellular Component	ESCRT II complex	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0042803 all species →	Molecular Function	protein homodimerization activity	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0071985 all species →	Biological Process	multivesicular body sorting pathway	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005819 all species →	Cellular Component	spindle	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12189	VPS25, EAP20; ESCRT-II complex subunit VPS25	-	Exosome	ko04147	deepkoala
K16574	MZT2A_B; mitotic-spindle organizing protein 2A/2B	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.