Gene detail

Detailed information of g1181.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047138883.1, ATP-dependent RNA helicase DDX19A [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q9NUU7	ATP-dependent RNA helicase DDX19A OS=Homo sapiens OX=9606 GN=DDX19A PE=1 SV=1
Q61655	ATP-dependent RNA helicase DDX19A OS=Mus musculus OX=10090 GN=Ddx19a PE=1 SV=2
Q9UMR2	ATP-dependent RNA helicase DDX19B OS=Homo sapiens OX=9606 GN=DDX19B PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF19055	ABC2_membrane_7	ABC-2 type transporter	Family	Interproscan
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF02892	zf-BED	BED zinc finger	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR043926	Domain	ABC transporter family G domain	Interproscan
IPR050352	Family	ATP-binding cassette subfamily G transporters	Interproscan
IPR046347	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000772	Domain	Ricin B, lectin domain	Interproscan
IPR035992	Homologous_superfamily	Ricin B-like lectins	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR48041	ABC TRANSPORTER G FAMILY MEMBER 28	Interproscan
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010494	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21548	CREBZF; ATF/CREB family transcription factor	-	Transfer RNA biogenesis	ko03016	deepkoala
			Transcription factors	ko03000	deepkoala
			Transcription factors	ko03000	deepkoala