Detailed information of g1186.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_053641780.1, high-affinity choline transporter 1-like isoform X2 [Cherax quadricarinatus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9GZV3High affinity choline transporter 1 OS=Homo sapiens OX=9606 GN=SLC5A7 PE=1 SV=1
Q9VE46High-affinity choline transporter 1 OS=Drosophila melanogaster OX=7227 GN=ChT PE=2 SV=2
Q8UWF0High-affinity choline transporter 1 OS=Torpedo marmorata OX=7788 GN=CHT1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19798Sulfotransfer_5Sulfotransferase domainDomainInterproscan
PF00474SSFSodium:solute symporter familyFamilyInterproscan
PF00071RasRas familyDomainInterproscan
PF01379Porphobil_deamPorphobilinogen deaminase, dipyromethane cofactor binding domainDomainInterproscan
PF03900Porphobil_deamCPorphobilinogen deaminase, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR053226FamilyPyrrolopyrazine Biosynthesis Cluster Protein FInterproscan
IPR052244FamilyHigh-affinity choline transporterInterproscan
IPR038377Homologous_superfamilySodium/glucose symporter superfamilyInterproscan
IPR001734FamilySodium/solute symporterInterproscan
IPR051065FamilyRas-related small GTPaseInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR000860FamilyPorphobilinogen deaminaseInterproscan
IPR022417DomainPorphobilinogen deaminase, N-terminalInterproscan
IPR022419Binding_sitePorphobilinogen deaminase, dipyrromethane cofactor binding siteInterproscan
IPR022418DomainPorphobilinogen deaminase, C-terminalInterproscan
IPR036803Homologous_superfamilyPorphobilinogen deaminase, C-terminal domain superfamilyInterproscan
IPR006594Conserved_siteLIS1 homology motifInterproscan
IPR040099FamilyZinc finger ZZ-type and EF-hand domain-containing protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48331SULFOTRANSFERASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45897HIGH-AFFINITY CHOLINE TRANSPORTER 1Interproscan
PTHR45704RAS-LIKE FAMILY MEMBER 11Interproscan
PTHR11557PORPHOBILINOGEN DEAMINASEInterproscan
PTHR22772NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005307Molecular Functioncholine:sodium symporter activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0008292Biological Processacetylcholine biosynthetic processInterproscan
GO:0015871Biological Processcholine transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0004418Molecular Functionhydroxymethylbilane synthase activityInterproscan
GO:0033014Biological Processtetrapyrrole biosynthetic processInterproscan
GO:0018160Biological Processpeptidyl-pyrromethane cofactor linkageInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006783Biological Processheme biosynthetic processInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01749hemC, HMBS; hydroxymethylbilane synthaseEC:2.5.1.61
Transcription machineryko03021deepkoala
Porphyrin metabolismko00860deepkoala

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