Gene detail

Detailed information of g11861.t1 in Montipora capitata

Genomic Location: Sc0000365:216728...237484
NR annotation: XP_015762444.1, PREDICTED: bicaudal D-related protein homolog [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11861.t1

atgtgcgactgcctattgatgcgtggaagttatggcggtcgattggaagctaagcaaatgaagttccctacgcgtgctgtttatactttggacatgaacgactatgacattggagtcgagaattttcacggtgagcaagacctcgagggaggaggttgtgattacgagcgagatttctgcaacggaataagcgacgaagggaaatctttgacggacgatagagatggacttgaaggggatgatgacatctatcgacaactagctcagaaagaaaaagaccttttgttggcagcagagctggggaaagctttacttgaaaaaaacgaagaacttaatcggaatcatgagcttttacaagaagagtattcccaggttgtagaggaattggaacaggacaagtatgagctgaaattaaaagtagaacgcttgcaggatgggaacgattctcgtgttcatgaacttcaagcggatttaatagcattgcgaaatgaactgaaaacactgcagacaaactcggaaacggacaaccaaaataaacgagaaacagttgctggtcttacagaagagaacgagcaacttcattcggacttgcaaaaggtcaaggctgagaatgaaagcctcagaagagatcatagtcttctcaggaagcaacttagtaggaaaattagcatcgatgatgatagactgtcagaaatggaaattgatgagctctgggaaaagctcaccagaatggaagaagaaaaattaagtctgacaaaaacaatttctgaccttgaagccagcaaggaatctctttcaaaagaagtagaagagcttttagaaaaaaatcagtcattggagaaaaaactaacatcaagcaagggcaagctcgcacattgtgaagaagagctgaacgaatccaaggacctcaatgcttttctccaggatcagattgatgaaataaagatgcaggcgtcaatggaccagctgtcgaggacttcattgttttctgaaatctctgacctgtctgtggctggagttgatgacgtcgatgagccgtacaagaaaatagacgccgtcccgtcaaaactgattggtacagttgcgagtctccatggctctccaaagcccctacaagcttcttcgtcgttaggcctgttgagcttgggattacaaaattcaaacaaacggcagagaccttacagcagccacagcgatgaagattctgaaaacagtgatctagaatacgacgatgatgaactagatgacgaggttgggattgtggaaagaaacagagatttctatgcgcagctcgagcaagaggaaaaagctaacgctcagctgagaaaagaggtcagagaagctcacgaagaattacgcgcgctttacgaagaactccgaggttctcaagagagcctggacgctgttgacgtcgaagaattaaactccaactcagattttaaaccggggtgccttacaacttttgtgaagagcttccgagatgttttggaagagttcataagtgacaacatcatgagaaccacgactcagaagcaccaattatgcaaagctcatgagacaatagagagtatggaagatgaacttaaagcaattaactccgaagctaaaacgaaggagatggaaatcataagtcttaaagaaaaactgattgaaaaggacaaagagaaagaacttattagggaacaaaggaacattttagccaaaggtcaatgtgaatcagagttggcttttgatattatgtacaatgaagctgtacaggagaggaaagacgctacagaaagggaaaaaaagatagaaaaagagttacttaaaactaaagaagacagggaagagctggaacaacaactcaaggaagcaatccatcaaaagctccttctctcggagcaacttgacgactggcagtttgacatggcttctttgatagacgaccaagttcagcgacaaatgaaatcagcggccaaagaacaagacgataatgcaagaagaagaagggtaactccttttactcgatccacacgatggaactggacaaatggcaacaacagacgccagactcagcatttgtcatga

Transcript

g11861.t1

ATGTGCGACTGCCTATTGATGCGTGGAAGTTATGGCGGTCGATTGGAAGCTAAGCAAATGAAGTTCCCTACGCGTGCTGTTTATACTTTGGACATGAACGACTATGACATTGGAGTCGAGAATTTTCACGGTGAGCAAGACCTCGAGGGAGGAGGTTGTGATTACGAGCGAGATTTCTGCAACGGAATAAGCGACGAAGGGAAATCTTTGACGGACGATAGAGATGGACTTGAAGGGGATGATGACATCTATCGACAACTAGCTCAGAAAGAAAAAGACCTTTTGTTGGCAGCAGAGCTGGGGAAagctttacttgaaaaaaacGAAGAACTTAATCGGAATCATGAGCTTTTACAAGAAGAGTATTCCCAGGTTGTAGAGGAATTGGAACAGGACAAGTATGAGCTGAAATTAAAAGTAGAACGCTTGCAGGATGGGAACGATTCTCGTGTTCATGAACTTCAAGCGGATTTAATAGCATTGCGAAATGAACTGAAAACACTGCAGACAAACTCGGAAACGGACAACCAAAATAAACGAGAAACAGTTGCTGGTCTTACAGAAGAGAACGAGCAACTTCATTCGGACTTGCAAAAGGTCAAGGCTGAGAATGAAAGCCTCAGAAGAGATCATAGTCTTCTCAGGAAGCAACTTAGTAGGAAAATTAGCATCGATGATGATAGACTGTCAGAAATGGAAATTGATGAGCTCTGGGAAAAGCTCACCAGAATGGAAGAAGAAAAATTAAGTCTGACAAAAACAATTTCTGACCTTGAAGCCAGCAAGGAATCTCTTTCAAAAGAAGTAGAAGAGCTTTTAGAAAAAAATCAGTCATTGGAGAAAAAACTAACATCAAGCAAGGGCAAGCTCGCacattgtgaagaagagctgaACGAATCCAAGGACCTCAATGCTTTTCTCCAGGATCAGATTGATGAAATAAAGATGCAGGCGTCAATGGACCAGCTGTCGAGGACTTCATTGTTTTCTGAAATCTCTGACCTGTCTGTGGCTGGAGTTGATGACGTCGATGAGCCGTACAAGAAAATAGACGCCGTCCCGTCAAAACTGATTGGTACAGTTGCGAGTCTCCATGGCTCTCCAAAGCCCCTACAAGCTTCTTCGTCGTTAGGCCTGTTGAGCTTGGGAttacaaaattcaaacaaacgGCAGAGACCTTACAGCAGCCACAGCGATGAAGATTCTGAAAACAGTGATCTAGAATACGACGATGATGAACTAGATGACGAGGTTGGGATTGTGGAAAGAAACAGAGATTTCTATGCGCAGCTCGAGCAAGAGGAAAAAGCTAACGCTCAGCTGAGAAAAGAGGTCAGAGAAGCTCACGAAGAATTACGCGCGCTTTACGAAGAACTCCGAGGTTCTCAAGAGAGCCTGGACGCTGTTGACGTCGAAGAATTAAACTCCAACTCAGATTTTAAACCGGGGTGCCTTACAACTTTTGTGAAGAGCTTCCGAGATGTTTTGGAAGAGTTCATAAGTGACAACATCATGAGAACCACGACTCAGAAGCACCAATTATGCAAAGCTCATGAGACAATAGAGAGTATGGAAGATGAACTTAAAGCAATTAACTCCGAAGCTAAAACGAAGGAGATGGAAATCATAAGTCTTAAAGAAAAACTGATTGAAAAGGACAAAGAGAAAGAACTTATTAGGGAACAAAGGAACATTTTAGCCAAAGGTCAATGTGAATCAGAGTTGGCTTTTGATATTATGTACAATGAAGCTGTACAGGAGAGGAAAGACGCTACAGAAAGGGAAAAAAAGATAGAAAAAGAGTTACTTAAAACTAAAGAAGACAGGGAAGAGCTGGAACAACAACTCAAGGAAGCAATCCATCAAAAGCTCCTTCTCTCGGAGCAACTTGACGACTGGCAGtttgacatggcttctttgatAGACGACCAAGTTCAGCGACAAATGAAATCAGCGGCCAAAGAACAAGACGATAATGCAAGAAGAAGAAGGGTAACTCCTTTTACTCGATCCACACGATGGAACTGGACAAATGGCAACAACAGACGCCAGACTCAGCATTTGTCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8SWR2	Bicaudal D-related protein homolog OS=Drosophila melanogaster OX=7227 GN=BicDR PE=1 SV=1
Q6DIX6	BICD family-like cargo adapter 2 OS=Xenopus tropicalis OX=8364 GN=bicdl2 PE=2 SV=1
Q6GLX3	BICD family-like cargo adapter 2 OS=Xenopus laevis OX=8355 GN=bicdl2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001396 (this species only)

Pfam domain

No Pfam domain signature was detected for g11861.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR051149 all species →	Family	Spindly/BICDR Dynein Motor Adapter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32123 all species →	BICD FAMILY-LIKE CARGO ADAPTER	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g11861.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g11861.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11861.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

135.7Max TPM

67.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	63.45	135.74
whole organisms · low pH treatment	15	15	71.88	131.17
whole organisms · extra low pH treatment pH treatment	12	12	68.58	133.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	135.74
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	122.65
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	111.20
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	101.63
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	95.18
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	93.51
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	77.41
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	64.47
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	62.48
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	57.58
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	56.47
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	55.64
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	52.86
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	36.49
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	34.10
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	31.76
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	31.21
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	30.83
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	29.31
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	27.70
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	24.15
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	131.17
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	130.95
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	119.61
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	104.10
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	103.70
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	92.86
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	62.75
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	55.13
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	50.64
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	47.09
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	42.58
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	39.82
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	38.71
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	32.22
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	26.91
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	133.76
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	121.97
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	110.23
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	105.66
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	66.24
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	64.40
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	50.40
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	44.27
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	43.33
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	34.01
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	29.24
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	19.41

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.