Gene detail

Detailed information of g11889.t2 in Acropora digitifera

Genomic Location: chr5Alt:26042563...26063778
NR annotation: XP_044176388.1, protein transport protein Sec24A-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11889.t2

ATGTCTGGAGGAGATTTGCCGCCGAGTAATTCTTTCTCGTTTGGTGAACAACAAACCTTTTTGAACCACAACGCCGTAAACCATTTGCAATCTCCATTAAGTCATGCTGCAGTCGTGCCAACAGAGAGGACAACAATAGAACAGAAAGACGCTTTTACATCTGGAGTGAACAACCAACTTCAGGGAGCTTGTAAAGCAATGAATCCAGCCACGAGAGGTTACCAAGCTCCATATTCTGGGGAGTGGCCTTCCTCTTTGTCTCCAGGGCAGCAAAACTATTCTGATCATTCTTCAGCCATTAATCATGCTCAAAGCATAACAAGTCAGGCCATGAATAACTCCTTTGGACCAGTCCCTACAAATACTTCTCCAAAGAGAAGTCCATTGGCTCATGGACATGGTATCCAACTGCCAGTGTCAAATGCAATATCAAATGGACCTGTTGCAGGAGGTACTTCATTACTGCAGGCATTCCCTAATCTGGGCTCCCAGCCAGCAACTAATGTAACCCTGCTGCCACCCTCTATGGGGAGTGCCCAGAGATTGACTTCTCCGTTGTCCCATGGGGTTGCCTTGAGCAATGGTCCTTCATCGCAGCTGCCACCCTCTGCTGTAAGTAGTAGCACTCAAGGGGGGTTTTCGCAACCTGGTTCAGCATTCACTCCGGTCATGTCATTGCAATCAAGTCATCCACCTCCACCACCAGGAGCTGTGGGAGATCCAATGCAAAGACAGGCAAATGCAAATCACCAAGCCCAACAATCACAACTTGGACAAAATGCTTCTCCTCCACAGCCAAATTTGCCAACAGGACAGGATGAAAGCCCACCACCTCAGACATCTGGTATGTTTCCAAGCTCAGCTCCACAGGGACCCCAAACTTTATCTGCACTCCATTCAAACAAGCCTAAAAGACCAGTTATGCCGATGAACACAGGCTACCCAGGACAGCGAGGTAGTCCTTCACCAAGATCAACACCTCCTCCACCAGTGGGATATAGTGGTTCAGCCCCAGCAGCAAGATCAACCCCACCTCCTTCCTCCAATCTGGCAGCATCAGGCATGCCTCCAGTTTCATATGACAGTCCAGCAACAGGCCAGACGGCAACCAGTCAAGATTCCCCAATTGGGACAAGGCCTATCTCATCCCGTCGTAGAATGTATCCTGCCCAGACGTCACCTCCATCCATGCCAGGTGTTCCTGCTGGGATGATGAATCTTCCAAATCAAGCCAATCAGTTTCCTGGGCAGATGCCTGGTATGGCTCCACAGCAGATGCCTCATGGTTCTAGTCCTTCACAGTTTCCATCACCTGGTGGTGTCCTGGAAGGTCCCATGGGAAGACTCACTGTTCAGCAACCCTCAGGCTGTCGGTCAATCAATCTAATGGAACAGCGACATATTCTTCCCCCAACTCCACTGGAACAACCCGCTCCAAATTTGGCTCCAGATCTTCGGAAGAGGAGTGCAGACCCAAGTGTTCTGTGCTGCACCTTGAATGCTGTTCCTGAAACCAAGAGCCTGTTAACCAAATCAAAACTGCCATTAGGAATCCACATTCACCCCTTTAGAGACTTGCAGGTAGAGGGACATTTTGTGATGCTTATTAAAATCAGCATGAATATCATGAGTGCAATTGTGGAAATACCTGCAAGGTGTCGTTCCTGTAGAACGTACATCAATCCATTTGTCACTTTTACGGATTCAAGAAGATGGCGATGTCCAATGTGTTTTAGAGTTAATGAAGTTCCAGAGGAATTCTGTTATGATCCCGCAACAAGACAGTATGGTGATCCTTCGAAAAGACCAGAAATTAGAAATGCTACTGTGGAGTTTATAGCACCTTCTGAGTACATGTTGCGGCCACCACAGCCTTCAGTATTTTTGTTTGTTTTGGATGTCTCTTTTAATGCCCTTGAAACAGGGTACCTTCAGTTGCTTTGTAAATTATTAAAAGAAAATCTAGAGAAAATGCCAGGAGACTCAAGGACACAGATTGGATTTATAACTTTTGATAGCACAGTTCACTTTTATAGTTTAAAGTCAAGACTCAACCAGCCTCAAATGCACATTGTATCAGATTTAGATGATGTTTTTCTTCCTTCCCCCGATGATTTGCTGGTCAATTTACATGAAAGCAAAGAGCTTGTGATGCAGCTTTTGGATTCGCTTCCAACATTGTTTTCCAAGGCTCCAAATATACACAGTGCAACAGGAGCTGCTCTGCAAGCTGCCCTGAAGTTGATCGGTCCCGTTGGTGGGCGTTTGACCCTCTTCCAGACAACCCTTCCCAGTATTGGACCAGGAGAGTTAAAGAGGAGAGAGGATGGTCAGAAATCCAGTCCTAAAGATGTTCAGAATCTCTCTCCAGCGACAGATTTCTATAAGAAGTTTGCACTGGACTGTGCTGCGGAACAAGTTGCGGTTGATTTATTTTTGCTTTCGGGACAGTATGCTGACATAGCTTCTTTAATGTGTGCGTCCAAGTATTCTGGTGGCTCTGTTATGTATTATCCAGATTTCCATGTCTCCAGGAATCCTGCTGCTGCAGAAAAATTTGAAAATGAATTTATACGTTACTTAACAAGAAAGATTGGATTTGAAGCTGTTATGAGAGTCCGTTGCACTAAAGGTGTCTCAATCCACACATTTCATGGAAATTTCTTTGTGCGCTCCCCGGACCTGGTTTCCTTGCCAAATGTGAGCCCTGACAGTGGGTTTAGTATGCAACTCGACATCGAGGACTCTCTGACCGATTCCAACATGGCCGTTTTCCAGTCAGCACTCCTTTACACCAACAGCAAAGGTGAACGCCGTATACGAGTTCACACGCTTGGTTTGCCAATCACAAACAAGCTGGCTGATCTATATGCCACTGCTGATGTGCAAGCGGTCGCCACACTGTTGACAAAAATGGCTGTGGATAGAACGCTGTCATCGTCTTTAGGCGATGCAAGAGAGGCGCTGATGAATGCGTGCATTGACGCCCTCAGTGTATACCGCACATCCGTAGCAAATCAACCACAGAGTAGTGGACTACTCGCTCCGTATTCCCTCAGACTTCTTCCCCTGTTTATTCTGGCCATTATGAAGCACACGGCGTTTCGTCTTGGTTCCAGCACGCGCTTGGATGAGCGCTGCTTTGCTATGCAGCAATTTAAAGTCATGCCTCTTAGTCTGGCCATGCTGTCTATCTACCCGAAGCTGTACCCAATACACGACCTCTCTGATGAGGGAGCTATCCAGACCAAATCAGGCCTTGTTGCCAAACCTCCTATCTTTCACCTGTCAGGCGAGAAGCTCAGCCGTAAAGGAATATTTCTTATGGACACAGGATTCGCGTTTTATATTTGGGTTGGACGGGATGCTCCTATCGATGTAATTCAATCTCTGTTTGCTGTTGCCAACTTTGGCAGTATCCCTGATAATTTGGGTTCGCTTCCAGCGCTGGAAAATCCACTATCCGAAAGAGTGAGGAGATTTCTTGATTACTTGCAGTTGCAAAGAACTTGTCACGCCAACATTTACGTTATAAAGGAGGATAGCCGAATGCGAGTGCTGTTCATTCAGAATTTAGTGGATGATAGATCAGAATCTGTGATGTCCTATTACGAATTTCTTGTGCATCTCCAGAAGCAGATTTCGAAATAA

Transcript

chr5Alt.g11889.t2

GATCAGGAGTTAAATATGTGTTAGGTGATGTCTGGAGGAGATTTGCCGCCGAGTAATTCTTTCTCGTTTGGTGAACAACAAACCTTTTTGAACCACAACGCCGTAAACCATTTGCAATCTCCATTAAGTCATGCTGCAGTCGTGCCAACAGAGAGGACAACAATAGAACAGAAAGACGCTTTTACATCTGGAGTGAACAACCAACTTCAGGGAGCTTGTAAAGCAATGAATCCAGCCACGAGAGGTTACCAAGCTCCATATTCTGGGGAGTGGCCTTCCTCTTTGTCTCCAGGGCAGCAAAACTATTCTGATCATTCTTCAGCCATTAATCATGCTCAAAGCATAACAAGTCAGGCCATGAATAACTCCTTTGGACCAGTCCCTACAAATACTTCTCCAAAGAGAAGTCCATTGGCTCATGGACATGGTATCCAACTGCCAGTGTCAAATGCAATATCAAATGGACCTGTTGCAGGAGGTACTTCATTACTGCAGGCATTCCCTAATCTGGGCTCCCAGCCAGCAACTAATGTAACCCTGCTGCCACCCTCTATGGGGAGTGCCCAGAGATTGACTTCTCCGTTGTCCCATGGGGTTGCCTTGAGCAATGGTCCTTCATCGCAGCTGCCACCCTCTGCTGTAAGTAGTAGCACTCAAGGGGGGTTTTCGCAACCTGGTTCAGCATTCACTCCGGTCATGTCATTGCAATCAAGTCATCCACCTCCACCACCAGGAGCTGTGGGAGATCCAATGCAAAGACAGGCAAATGCAAATCACCAAGCCCAACAATCACAACTTGGACAAAATGCTTCTCCTCCACAGCCAAATTTGCCAACAGGACAGGATGAAAGCCCACCACCTCAGACATCTGGTATGTTTCCAAGCTCAGCTCCACAGGGACCCCAAACTTTATCTGCACTCCATTCAAACAAGCCTAAAAGACCAGTTATGCCGATGAACACAGGCTACCCAGGACAGCGAGGTAGTCCTTCACCAAGATCAACACCTCCTCCACCAGTGGGATATAGTGGTTCAGCCCCAGCAGCAAGATCAACCCCACCTCCTTCCTCCAATCTGGCAGCATCAGGCATGCCTCCAGTTTCATATGACAGTCCAGCAACAGGCCAGACGGCAACCAGTCAAGATTCCCCAATTGGGACAAGGCCTATCTCATCCCGTCGTAGAATGTATCCTGCCCAGACGTCACCTCCATCCATGCCAGGTGTTCCTGCTGGGATGATGAATCTTCCAAATCAAGCCAATCAGTTTCCTGGGCAGATGCCTGGTATGGCTCCACAGCAGATGCCTCATGGTTCTAGTCCTTCACAGTTTCCATCACCTGGTGGTGTCCTGGAAGGTCCCATGGGAAGACTCACTGTTCAGCAACCCTCAGGCTGTCGGTCAATCAATCTAATGGAACAGCGACATATTCTTCCCCCAACTCCACTGGAACAACCCGCTCCAAATTTGGCTCCAGATCTTCGGAAGAGGAGTGCAGACCCAAGTGTTCTGTGCTGCACCTTGAATGCTGTTCCTGAAACCAAGAGCCTGTTAACCAAATCAAAACTGCCATTAGGAATCCACATTCACCCCTTTAGAGACTTGCAGGTAGAGGGACATTTTGTGATGCTTATTAAAATCAGCATGAATATCATGAGTGCAATTGTGGAAATACCTGCAAGGTGTCGTTCCTGTAGAACGTACATCAATCCATTTGTCACTTTTACGGATTCAAGAAGATGGCGATGTCCAATGTGTTTTAGAGTTAATGAAGTTCCAGAGGAATTCTGTTATGATCCCGCAACAAGACAGTATGGTGATCCTTCGAAAAGACCAGAAATTAGAAATGCTACTGTGGAGTTTATAGCACCTTCTGAGTACATGTTGCGGCCACCACAGCCTTCAGTATTTTTGTTTGTTTTGGATGTCTCTTTTAATGCCCTTGAAACAGGGTACCTTCAGTTGCTTTGTAAATTATTAAAAGAAAATCTAGAGAAAATGCCAGGAGACTCAAGGACACAGATTGGATTTATAACTTTTGATAGCACAGTTCACTTTTATAGTTTAAAGTCAAGACTCAACCAGCCTCAAATGCACATTGTATCAGATTTAGATGATGTTTTTCTTCCTTCCCCCGATGATTTGCTGGTCAATTTACATGAAAGCAAAGAGCTTGTGATGCAGCTTTTGGATTCGCTTCCAACATTGTTTTCCAAGGCTCCAAATATACACAGTGCAACAGGAGCTGCTCTGCAAGCTGCCCTGAAGTTGATCGGTCCCGTTGGTGGGCGTTTGACCCTCTTCCAGACAACCCTTCCCAGTATTGGACCAGGAGAGTTAAAGAGGAGAGAGGATGGTCAGAAATCCAGTCCTAAAGATGTTCAGAATCTCTCTCCAGCGACAGATTTCTATAAGAAGTTTGCACTGGACTGTGCTGCGGAACAAGTTGCGGTTGATTTATTTTTGCTTTCGGGACAGTATGCTGACATAGCTTCTTTAATGTGTGCGTCCAAGTATTCTGGTGGCTCTGTTATGTATTATCCAGATTTCCATGTCTCCAGGAATCCTGCTGCTGCAGAAAAATTTGAAAATGAATTTATACGTTACTTAACAAGAAAGATTGGATTTGAAGCTGTTATGAGAGTCCGTTGCACTAAAGGTGTCTCAATCCACACATTTCATGGAAATTTCTTTGTGCGCTCCCCGGACCTGGTTTCCTTGCCAAATGTGAGCCCTGACAGTGGGTTTAGTATGCAACTCGACATCGAGGACTCTCTGACCGATTCCAACATGGCCGTTTTCCAGTCAGCACTCCTTTACACCAACAGCAAAGGTGAACGCCGTATACGAGTTCACACGCTTGGTTTGCCAATCACAAACAAGCTGGCTGATCTATATGCCACTGCTGATGTGCAAGCGGTCGCCACACTGTTGACAAAAATGGCTGTGGATAGAACGCTGTCATCGTCTTTAGGCGATGCAAGAGAGGCGCTGATGAATGCGTGCATTGACGCCCTCAGTGTATACCGCACATCCGTAGCAAATCAACCACAGAGTAGTGGACTACTCGCTCCGTATTCCCTCAGACTTCTTCCCCTGTTTATTCTGGCCATTATGAAGCACACGGCGTTTCGTCTTGGTTCCAGCACGCGCTTGGATGAGCGCTGCTTTGCTATGCAGCAATTTAAAGTCATGCCTCTTAGTCTGGCCATGCTGTCTATCTACCCGAAGCTGTACCCAATACACGACCTCTCTGATGAGGGAGCTATCCAGACCAAATCAGGCCTTGTTGCCAAACCTCCTATCTTTCACCTGTCAGGCGAGAAGCTCAGCCGTAAAGGAATATTTCTTATGGACACAGGATTCGCGTTTTATATTTGGGTTGGACGGGATGCTCCTATCGATGTAATTCAATCTCTGTTTGCTGTTGCCAACTTTGGCAGTATCCCTGATAATTTGGGTTCGCTTCCAGCGCTGGAAAATCCACTATCCGAAAGAGTGAGGAGATTTCTTGATTACTTGCAGTTGCAAAGAACTTGTCACGCCAACATTTACGTTATAAAGGAGGATAGCCGAATGCGAGTGCTGTTCATTCAGAATTTAGTGGATGATAGATCAGAATCTGTGATGTCCTATTACGAATTTCTTGTGCATCTCCAGAAGCAGATTTCGAAATAAGCTTCAGGTTAACGGTGTGTGCGATTCTTGAACAGTGCAACGTGGTAGAGTTCGCGCACCAATCAATGAAAAACTCACAAAGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U2P1	Protein transport protein Sec24A OS=Mus musculus OX=10090 GN=Sec24a PE=1 SV=1
O95486	Protein transport protein Sec24A OS=Homo sapiens OX=9606 GN=SEC24A PE=1 SV=2
O95487	Protein transport protein Sec24B OS=Homo sapiens OX=9606 GN=SEC24B PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04810 all species →	zf-Sec23_Sec24	Sec23/Sec24 zinc finger	Domain	Interproscan
PF04815 all species →	Sec23_helical	Sec23/Sec24 helical domain	Domain	Interproscan
PF04811 all species →	Sec23_trunk	Sec23/Sec24 trunk domain	Domain	Interproscan
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan
PF08033 all species →	Sec23_BS	Sec23/Sec24 beta-sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006895 all species →	Domain	Zinc finger, Sec23/Sec24-type	Interproscan
IPR006900 all species →	Domain	Sec23/Sec24, helical domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR006896 all species →	Domain	Sec23/Sec24, trunk domain	Interproscan
IPR036175 all species →	Homologous_superfamily	Sec23/Sec24 helical domain superfamily	Interproscan
IPR036174 all species →	Homologous_superfamily	Zinc finger, Sec23/Sec24-type superfamily	Interproscan
IPR041742 all species →	Domain	Sec24-like, trunk domain	Interproscan
IPR036180 all species →	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR050550 all species →	Family	SEC23/SEC24 family, SEC24 subfamily	Interproscan
IPR012990 all species →	Domain	Sec23/Sec24 beta-sandwich	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13803 all species →	SEC24-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14007	SEC24; protein transport protein SEC24	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11889.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.