Gene detail

Detailed information of g11892.t1 in Acropora digitifera

Genomic Location: chr5Alt:26104349...26114308
NR annotation: XP_029199044.1, protein transport protein Sec61 subunit alpha [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KHX4	Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus OX=9913 GN=SEC61A2 PE=2 SV=3
Q9H9S3	Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens OX=9606 GN=SEC61A2 PE=1 SV=3
Q9JLR1	Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus OX=10090 GN=Sec61a2 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00344 all species →	SecY	SecY	Family	Interproscan
PF10559 all species →	Plug_translocon	Plug domain of Sec61p	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002208 all species →	Family	SecY/SEC61-alpha family	Interproscan
IPR023201 all species →	Homologous_superfamily	SecY domain superfamily	Interproscan
IPR019561 all species →	Domain	Translocon Sec61/SecY, plug domain	Interproscan
IPR030659 all species →	Conserved_site	SecY conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10906 all species →	SECY/SEC61-ALPHA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005048 all species →	Molecular Function	signal sequence binding	Interproscan
GO:0005784 all species →	Cellular Component	Sec61 translocon complex	Interproscan
GO:0006616 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane, translocation	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0031204 all species →	Biological Process	post-translational protein targeting to membrane, translocation	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10956	SEC61A; protein transport protein SEC61 subunit alpha	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11892.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

354.4Max TPM

277.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	277.22	354.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	354.45
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	336.15
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	333.88
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	326.08
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	323.81
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	318.72
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	313.99
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	312.12
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	304.92
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	300.72
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	300.58
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	299.63
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	297.75
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	296.99
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	294.73
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	292.31
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	287.49
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	283.76
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	281.42
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	281.01
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	280.58
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	276.32
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	272.29
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	270.86
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	265.59
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	265.03
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	264.57
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	264.07
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	262.52
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	254.99
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	242.41
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	236.52
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	233.85
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	229.58
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	216.14
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	214.36
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	207.71
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	207.00
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	206.55

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.