Gene detail

Detailed information of g11893.t1 in Montipora capitata

Genomic Location: Sc0000367:229772...269917
NR annotation: XP_029203759.2, cytoplasmic aconitate hydratase-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11893.t1

atggcggccgccaagagccagtacacctctcacatcaagactcttcccctcaagtccggagaatgccgctattttgacatttcaagcctaaacaaagaacgatatggtcgccttccattctcaatcagggtcttgttggagtcagctgttcgtaattgtgatggttttcaagtgaagtccaaggatgtagagaacatattagactgggaaaacaatcagaaagaaaatgttgaaatcccattcatgccagccagagttatcctccaagattttactggggttcctgctgttgttgattttgctgccatgagagatgcagtcaaaaggcttggaggggatccaggcaaaatcaacccactctgtccggtggacctggtaattgaccattccgtacaagttgatgtatcaagaagctccacagcacttcggaagaatcaggaaatggaattcatgaggaacaaagaaagatttctttttttgaagtggggctcaaaagccttcaagaatatgacaattgttccacctggatcaggcattgtacatcaggttaacttggaatatcttggccgtgttgttttcaacatggacaattttgtgtatcctgacagtattgtcggtacagactcccatacaactatgatcaatggactgggaatagttggttggggtgttggaggcatcgaggctgaagcagttatgttaggtcaagctattagcatggtgttgcctaaagttgttggatataaattgacaggacaagttaagccttacatcacatccacagatgtggtactcaccattactaagcatcttcgccaagttggtgttgttggcaagtttgtggaattttttggacctggtgttagccacctctcaatagctgacagagccacaattgcaaacatgtgcccagagtatggagctactattggcttctttccagttgatgaaaagagtttactgtatctcaggcagacaggtcgtagtgaagagaccttggaacgtgttgaagcttacctgaaagcaacaaaaatgttcagggactactcggacccaagcaatgatccagtgttctctgagttggtggagatggatttatcatctgtgacaccttcattatcaggaccaaagagaccccacgacagggtgtccttgtccaacatgaagcaagatttcattgattgtttaaacaataaagtaggtttcaaaggttttggaattccagaagatgagcagtctgtgaaagttcctcttacttttgaagggcaggatttcaagctttcgcatggttctgtggttattgctgccattacgagttgtacaaacaccagcaatccgtcagttatgcttggagcaggactattggccaagaaagctgtagagcttggtttggaagttaaaccgtacatcaagacaagcttgtctccagggtctggtgtggtgacttattacctgcgtgagagtggagtcattccaagtctggaaaaactaggatttaatattgtaggttatggttgtatgacgtgcataggaaattcaggccccttatcacaaccagtagcagcggccattgaaaaaggtgaccttgttgtggtgggcatcttatcaggaaacaggaattttgaaggacgcatccatcccctgactagagcaaactaccttgcttcccctcccctggtgattgcatatgccattgctggcacaacactaatagactttgagaaggaacctttaggtatatccaaagacgggaaagaagtcttcctgactgacatttggccaacaagagaagaactccaggtgattgagaggcagtttgtgattcctgcgatgttcaaagaagtctattccaaagtaacggatggcaatccacgctggaattcacttgatgcccctgacagtatgctgtacccatgggaccctaaatcaacttacatcaagcacccgcctttctttgcaacaatggaaagagatttacccgttagtgagagcattaggaatgcagctgtactattaaacttgggagactccgttactactgaccacatatcaccggcaggcagcatttctcgcaccagtcccgcggcacgctatctggctgcgaaagggcttgcaccacgtgaattcaactcttatggatcccgtcgcggaaacgatgccgttatgactcgtggcacttttgctaacatcaggctggtcaataagtttataggaaaagctgctcctaaaacggtccattttccttcaggggatacgatggatatttttgatgcctctgagcggtaccaacaggaaaaacgccaacttattattcttgccggcaaggattatgggtcgggatcgtcacgtgactgggctgccaaaggaccatggatgctgggtgtcaaagcggtgatcacagagagctttgaacgaattcaccgcagcaatctggtgggaatgggtattatgccccttcagtatcttcctggccagaacgctgaaagcctggggctcaccggaaaagaaagttacacaatagaaatacctgaagatttgaaaactggccaaactttgactgttaagttaaatgatggccgctcgtttcaagtcaaagttcgatttgacactgatgtggaactaatgtacttcaaacatggcggcatcctgaactacatgatcaggagcatgctccgataa

Transcript

g11893.t1

ATGGCGGCCGCCAAGAGCCAGTACACCTCTCACATCAAGACTCTTCCCCTCAAGTCCGGAGAATGCCGCTATTTTGACATTTCAAGCCTAAACAAAGAACGATATGGTCGCCTTCCATTCTCAATCAGGGTCTTGTTGGAGTCAGCTGTTCGTAATTGTGATGGTTTTCAAGTGAAGTCCAAGGATGTAGAGAACATATTAGACTGGGAAAACAATCagaaagaaaatgttgaaatcccATTCATGCCAGCCAGAGTTATCCTCCAAGATTTTACTGGGGTTCCTGCTGTTGTTGATTTTGCTGCCATGAGAGATGCAGTCAAAAGGCTTGGAGGGGATCCAGGCAAAATCAACCCACTCTGTCCGGTGGACCTGGTAATTGACCATTCCGTACAAGTTGATGTATCAAGAAGCTCCACAGCACTTCGGAAGAATCAGGAAATGGAATTCATGAGGAACAAAgaaagatttctttttttgaagTGGGGCTCAAAAGCCTTCAAGAATATGACAATTGTTCCACCTGGATCAGGCATTGTACATCAGGTTAACTTGGAATATCTTGGCCGTGTTGTTTTCAACATGGACAATTTTGTGTATCCTGACAGTATTGTCGGTACAGACTCCCATACAACTATGATCAATGGACTGGGAATAGTTGGTTGGGGTGTTGGAGGCATCGAGGCTGAAGCAGTTATGTTAGGTCAAGCTATTAGCATGGTGTTGCCTAAAGTTGTTGGATATAAATTGACAGGACAAGTTAAGCCTTACATCACATCCACAGATGTGGTACTCACCATTACTAAGCATCTTCGCCAAGTTGGTGTTGTTGGCAAGTTTGTGGAATTTTTTGGACCTGGTGTTAGCCACCTCTCAATAGCTGACAGAGCCACAATTGCAAACATGTGCCCAGAGTATGGAGCTACTATTGGCTTCTTTCCAGTTGATGAAAAGAGTTTACTGTATCTCAGGCAGACAGGTCGTAGTGAAGAGACCTTGGAACGTGTTGAAGCTTACCTGAAAGCAACAAAAATGTTCAGGGACTACTCGGACCCAAGCAATGATCCAGTGTTCTCTGAGTTGGTGGAGATGGATTTATCATCTGTGACACCTTCATTATCAGGACCAAAGAGACCCCACGACAGGGTGTCCTTGTCCAACATGAAGCAAGATTTCATTGATTGTTTAAACAATAAAGTAGGTTTCAAAGGTTTTGGAATTCCAGAAGATGAGCAGTCTGTGAAAGTTCCTCTTACTTTTGAAGGGCAGGATTTCAAGCTTTCGCATGGTTCTGTGGTTATTGCTGCCATTACGAGTTGTACAAACACCAGCAATCCGTCAGTTATGCTTGGAGCAGGACTATTGGCCAAGAAAGCTGTAGAGCTTGGTTTGGAAGTTAAACCGTACATCAAGACAAGCTTGTCTCCAGGGTCTGGTGTGGTGACTTATTACCTGCGTGAGAGTGGAGTCATTCCAAGTCTGGAAAAACTAGGatttAATATTGTAGGTTATGGTTGTATGACGTGCATAGGAAATTCAGGCCCCTTATCACAACCAGTAGCAGCGGCCATTGAAAAAGGTGACCTTGTTGTGGTGGGCATCTTATCAGGAAACAGGAATTTTGAAGGACGCATCCATCCCCTGACTAGAGCAAACTACCTTGCTTCCCCTCCCCTGGTGATTGCATATGCCATTGCTGGCACAACACTAATAGACTTTGAGAAGGAACCTTTAGGTATATCCAAAGACGGGAAAGAAGTCTTCCTGACTGACATTTGGCCAACAAGAGAAGAACTCCagGTGATTGAGAGGCAGTTTGTGATTCCTGCGATGTTCAAAGAAGTCTATTCCAAAGTAACGGATGGCAATCCACGCTGGAATTCACTTGATGCCCCTGACAGTATGCTGTACCCATGGGACCCTAAATCAACTTACATCAAGCACCCGCCTTTCTTTGCAACAATGGAAAGAGATTTACCCGTTAGTGAGAGCATTAGGAATGCAGCTGTACTATTAAACTTGGGAGACTCCGTTACTACTGACCACATATCACCGGCAGGCAGCATTTCTCGCACCAGTCCCGCGGCACGCTATCTGGCTGCGAAAGGGCTTGCACCACGTGAATTCAACTCTTATGGATCCCGTCGCGGAAACGATGCCGTTATGACTCGTGGCACTTTTGCTAACATCAGGCTGGTCAATAAGTTTATAGGAAAAGCTGCTCCTAAAACGGTCCATTTTCCTTCAGGGGATACGATGGATATTTTTGATGCCTCTGAGCGGTACCAACAGGAAAAACGCCAACTTATTATTCTTGCCGGCAAGGATTATGGGTCGGGATCGTCACGTGACTGGGCTGCCAAAGGACCATGGATGCTGGGTGTCAAAGCGGTGATCACAGAGAGCTTTGAACGAATTCACCGCAGCAATCTGGTGGGAATGGGTATTATGCCCCTTCAGTATCTTCCTGGCCAGAACGCTGAAAGCCTGGGGCTCACCGGAAAAGAAAGTTACACAATAGAAATACCTGAAGATTTGAAAACTGGCCAAACTTTGACTGTTAAGTTAAATGATGGCCGCTCGTTTCAAGTCAAAGTTCGATTTGACACTGATGTGGAACTAATGTACTTCAAACATGGCGGCATCCTGAACTACATGATCAGGAGCATGCTCCGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28271	Cytoplasmic aconitate hydratase OS=Mus musculus OX=10090 GN=Aco1 PE=1 SV=3
Q01059	Cytoplasmic aconitate hydratase OS=Oryctolagus cuniculus OX=9986 GN=ACO1 PE=1 SV=1
Q90875	Cytoplasmic aconitate hydratase OS=Gallus gallus OX=9031 GN=ACO1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002405 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00330 all species →	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan
PF00694 all species →	Aconitase_C	Aconitase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006249 all species →	Family	Aconitase/Iron-responsive element-binding protein 2	Interproscan
IPR015931 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR015928 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR001030 all species →	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR044137 all species →	Domain	Aconitase A, swivel domain	Interproscan
IPR018136 all species →	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR036008 all species →	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan
IPR000573 all species →	Domain	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11670 all species →	ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003994 all species →	Molecular Function	aconitate hydratase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan
GO:0030350 all species →	Molecular Function	iron-responsive element binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01681	ACO, acnA; aconitate hydratase	EC:4.2.1.3	Carbon fixation pathways in prokaryotes	ko00720	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11893.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

155.9Max TPM

46.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	50.69	155.87
whole organisms · low pH treatment	15	15	38.51	129.31
whole organisms · extra low pH treatment pH treatment	12	12	47.04	144.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	155.87
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	151.80
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	148.09
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	127.29
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	96.50
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	74.56
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	47.34
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	39.81
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	35.74
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	34.00
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	31.26
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	23.30
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	16.68
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	15.53
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	13.79
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	12.75
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	12.40
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	12.21
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	6.54
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	4.66
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	4.35
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	129.31
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	121.93
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	117.37
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	30.86
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	29.94
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	28.90
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	18.05
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	16.45
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	15.92
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	15.35
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	15.15
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	15.05
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	12.12
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	6.12
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	5.17
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	144.28
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	133.39
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	127.88
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	34.14
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	29.31
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	27.85
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	15.78
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	15.20
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	14.84
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	8.78
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	7.68
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	5.36

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.