Detailed information of g119.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047128971.1, E3 ubiquitin-protein ligase RNF139-like [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q96MT1RING finger protein 145 OS=Homo sapiens OX=9606 GN=RNF145 PE=1 SV=2
Q5SWK7RING finger protein 145 OS=Mus musculus OX=10090 GN=Rnf145 PE=1 SV=1
Q0IJ20RING finger protein 145 OS=Xenopus tropicalis OX=8364 GN=rnf145 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF13705TRC8_NTRC8 N-terminal domainDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF01547SBP_bac_1Bacterial extracellular solute-binding proteinFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF12397U3snoRNP10U3 small nucleolar RNA-associated protein 10 FamilyInterproscan
PF08146BP28CTBP28CT (NUC211) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011016DomainZinc finger, RING-CH-typeInterproscan
IPR050731FamilyHRD1 family E3 ubiquitin-protein ligasesInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR025754DomainTRC8-like, N-terminal domainInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR039195FamilyAnkyrin repeat domain-containing protein 40Interproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR001245DomainSerine-threonine/tyrosine-protein kinase, catalytic domainInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR006059FamilyBacterial-type extracellular solute-binding proteinInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR052254FamilyCUL4-DDB1 E3 ligase complex substrate receptorInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR022125DomainU3 small nucleolar RNA-associated protein 10, N-terminalInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR040191FamilyU3 small nucleolar RNA-associated protein 10Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR012954DomainBP28, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22763RING ZINC FINGER PROTEINInterproscan
PTHR24192ANKYRIN REPEAT DOMAIN 40Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR24346MAP/MICROTUBULE AFFINITY-REGULATING KINASEInterproscan
PTHR30061MALTOSE-BINDING PERIPLASMIC PROTEINInterproscan
PTHR44472DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATEDInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR13457BAP28Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0012505Cellular Componentendomembrane systemInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0035556Biological Processintracellular signal transductionInterproscan
GO:0015768Biological Processmaltose transportInterproscan
GO:0042956Biological Processmaltodextrin transmembrane transportInterproscan
GO:0055052Cellular ComponentATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containingInterproscan
GO:1901982Molecular Functionmaltose bindingInterproscan
GO:0080008Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0030515Molecular FunctionsnoRNA bindingInterproscan
GO:0030686Cellular Component90S preribosomeInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034455Cellular Componentt-UTP complexInterproscan
GO:0045943Biological Processpositive regulation of transcription by RNA polymerase IInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02027ABC.MS.S; multiple sugar transport system substrate-binding protein-Ribosome biogenesisko03009deepkoala
Spliceosomeko03041deepkoala
Transportersko02000deepkoala

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