Gene detail

Detailed information of g1193.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027050678.1, steroid 17-alpha-hydroxylase/17,20 lyase-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P24457	Cytochrome P450 2D11 OS=Mus musculus OX=10090 GN=Cyp2d11 PE=2 SV=2
P24455	Cytochrome P450 2A9 OS=Mesocricetus auratus OX=10036 GN=CYP2A9 PE=2 SV=2
P56593	Cytochrome P450 2A12 OS=Mus musculus OX=10090 GN=Cyp2a12 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	ULD\|UBL\|SUMO
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08385	DHC_N1	Dynein heavy chain, N-terminal region 1	Family	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08608	Wyosine_form	Wyosine base formation	Family	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF02709	Glyco_transf_7C	N-terminal domain of galactosyltransferase	Family	Interproscan
PF13733	Glyco_transf_7N	N-terminal region of glycosyl transferase group 7	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08232	Striatin	Striatin family	Family	Interproscan
PF11976	Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	Family	Interproscan
PF00067	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013594	Domain	Dynein heavy chain, tail	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034556	Family	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR013917	Domain	tRNA wybutosine-synthesis	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR029039	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR027791	Domain	Galactosyltransferase, C-terminal	Interproscan
IPR027995	Domain	Galactosyltransferase, N-terminal	Interproscan
IPR003859	Family	Beta-1,4-galactosyltransferase	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR051488	Family	WD repeat-containing striatin	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR013258	Domain	Striatin, N-terminal	Interproscan
IPR022617	Domain	Rad60/SUMO-like domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR052324	Family	NFATC2-Interacting & DNA Repair	Interproscan
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13948	RNA-BINDING PROTEIN	Interproscan
PTHR13930	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE	Interproscan
PTHR19300	BETA-1,4-GALACTOSYLTRANSFERASE	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR15653	STRIATIN	Interproscan
PTHR47187	NFATC2-INTERACTING PROTEIN	Interproscan
PTHR24289	STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0031591	Biological Process	wybutosine biosynthetic process	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0008378	Molecular Function	galactosyltransferase activity	Interproscan
GO:0070085	Biological Process	glycosylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001816	Biological Process	cytokine production	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0004508	Molecular Function	steroid 17-alpha-monooxygenase activity	Interproscan
GO:0042446	Biological Process	hormone biosynthetic process	Interproscan
GO:0042448	Biological Process	progesterone metabolic process	Interproscan
GO:0047442	Molecular Function	obsolete 17-alpha-hydroxyprogesterone aldolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17608	STRN1_3_4; striatin 1/3/4	-	Transfer RNA biogenesis	ko03016	deepkoala
K17608	STRN1_3_4; striatin 1/3/4	-	Protein phosphatases and associated proteins	ko01009	deepkoala