Gene detail

Detailed information of g11948.t1 in Tripedalia maipoensis

Genomic Location: scaffold_9:24350886...24366412
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11948.t1

ATGGAAGGTGAGAATTTACCCCAGTCCTCTGCTGCTGGAAAGATACGAGTTCGTCGTGCACATGGCGGGCGAGCAAAGCAGAAGCCTTACGCACGAAGGCAAGTGATAGGATCAGGCAGTGATGAAGCCAACCAACCAAAGGGATTGCTACAGAAAGTTGGTAGTTTTATTGTCCCATCATGGCTCTCAAACTGGTTTGCTGGAACAAAGGAGGAAATACTTGAAGACACGGATACCTCCGATGATGAAGCACCCCCAGATCAGACTGAAAGTGTTTTCAGAAACAGTGAGTTGCCCAGGTACCAGGTTGGTAATCATGTAAGAGATAAAAAGGCCTTGATAGTGAACAACAACTTTGTCCTGAAGCAGTCTGACGTAGCTCAGTCAAGTCAGGGCCAAACCTCTAGGAAAAGTCTCACGGTCCCTACTGCTATCCAAGAGAAAGGCCAACTGCAGTCAAGTAGCTCCGATGGCGTAGAACGTGAAACAAGAAGTGAGGGAAACGTATTCAGTATGGACTTAACTACTGATACTGCTTATTCATCAATCACTAGCAAGATTTCAGTGGATTCATCGCAACCTACCATTAAATCTTTCTCGGTATTTGGAACTCCTAAGCCTGGAATAGCAAAATCTACCTCGCCTGCCTTCAAGGTTTCCTCTTTCGTTGCCACAAAGCCACGAACTTTTTCTCCAAGCTCGGCATCCCCATTTTATAGGGGAAGGACTGCTTTTGGCGGTGCGTCTGCCACCCGGGAGTGGCAGTCAAAACGCCAGCGCCTGTCTCCAGTGGCGTCATCAGTTATGATGCCAAAGGCAAAGATTCAAGCACGATCCATTGAGAGCAGAGGTAAGGAAACTGTCAGCGGTGAAACAGCCAAAAGGATTTTAAAAGCACTTGAGAAAATGTCTTCGCCCTTACAAGATGCTAGGCGGATGACATTGTCAACGGCTGTTGGTAGTCGGCTCCAGGCTCCCAAGACATCAAGCGAGATGGGAAGCTCTCATGTTGTTTCTGAGGGGCTTCCAAGTACAACAGCTAGTGTCTCAGATACAACCACTACTGCCCAGACTTCCTTTGCCATGCCACAGACTTTTTCTGCATTCAAACCAAAAGGATTACCGCTCTCCTTCTCACCCGACGACTTTAGTACAGCAAAAAGACAATCCTTTAAGATAAAGAGGCAAAAAACATACTCACACCAGCCTGCTAGTCGCGCGGAGGACACAGAATTGGAACCGCCTAACCTTTCGTCTATCCCAGATGTTACACCTTTTGTCGTCAAGACCTTGCCCAAGTTTGATTTTTCCAAGCCAGAGAAGCCTACAAATAGTGAAGAAGCGGAAGGACCGAAACCAGGGGATAACTCAGCGTCACAGGAAAGGACATTGATTCAAGGAACGAAGACAACAAGTGGGAAATTTAGTTTTACCGTACCTGAAGTTAAGTCAGCACCTAAGGTTAATGCATCAATGAGCAACGCCCGGGAGTCGTTTAACTTTAGTAAGCCTGTGCACAAGGTAGTTTCAAATTCAGTAGTGAAAAGTGCAGAAGACAAGGACGATAAGGTGTCCAGTACGGCTGGAATTTCCCCCAAATCGTCGGACTTAAAGCTTTTAAGTACTGGACCCGTTTCATTCCCAAACTTTTCCCCTCCAAAAGGATCGTGGGAATGTAGTCAGTGCTTGATACGTAACAAACCTGAGAGGCTTGCATGTGCTGCTTGTGGACACGAGAAGAATGCAAGTAACTTACCATTAAGAAAAAGGGTGTCAAACAGTGGCGAAAGTAATTCGACGAAGGAAACTCCGGAAAAAATCCCTACTATGAGTGTCAAGTCTAATGTATTCGCGAAATTTGCGCCAAAGGAAGGATCGTGGGATTGCAGCGTGTGCATGATTCAGAATGATGCTGGGCGCCTTGCCTGCGTAGCTTGTCAAGCTAAGAAGCCCAATAGTGCCACATCAACTACGGCCACAGAAGGAAGTAGCACTGTGCCGCCATCTATCTTTGCCAAATTCGCACCCAAACCGGGGTCCTGGGAATGCACAACGTGCCTGTTACGCAACGATGCCGATAAAATGGTTTGCCCTAGTTGTAACAGTCCTAAGCCCAGCTCACAGAAAACCAAGGAACCAACCGCCCTCCTCAAAGCTGGACCGTCATTGTTCGAAAAGTTTGCTCCTAAACCAGGGTCGTGGAAGTGTTCAACATGTTTGATCCAAAACGAGGCAGACAAGTCGTCGTGCATTGCTTGCAGCGCGGCTAAGCCATCTGAGCTTGGGGACAAGGCAAAGCAACCCAGCGCTACGAATGGGCGAGCTGTTGCACCAGACAAAGCAGGCATTGGACTTTTTGCCAAATTTGCTGCAAAACCAGGCTCCTGGGAGTGCCCAACATGTATGATTAGGAACGATGAAAATAAGGAAGAGTGTGTCGCTTGTCAAAGCAAGAATCCGTCAATGAAGGGCAGTGGAAAACCTTCCATACCGAGTGGCTCAAATGTTTTTGCCAAATTTGCTCCGAAACCAGGATCTTGGGACTGTGACGTTTGCATGGTTCGCAATGATGCGGACAAGACCCGATGTTCAGCGTGCGATGCGCCTAAGGACAAGAGTGCCCCTAAAGACGATGCAAAGGAAAATGTCAAGCCGAACGAAGGGCCCAAGTTCAGTTTTGGGGTGTCCACGTCCACTGCGCCCAAATTCTCGTTTGGACTTCAACCAAACTCCAGTCAGTCAGCTATCAAATTTGGTGTCACCCCCGCTATCGATAAGAATGCTATAGGAGCCCCTCAGACCTTTTCTTTTGGGGTGAAATCGAGCTCAGAGAGTATCGTGTTTGGCACTAGCCCGTTTTCTTCGTCGTCATTTGCCAGCACGGCTGATACCACTGCGACCATCACTGATGATGCTAAAACCTCGAAAGGTATTCGAGAAAACACTACCAGTGGTATTTTGTTTGGGGCGGCATCGGTCAAACCTGCCTCCTTTGATGCAAAAAGTGCCGATTTAACTTCTAAGGCAGTGACTGAGAATCAGGCTAAGGAACCACTTGGTCAGGGGATGCCCTCCAGTGGATTCCAGTTCGGTTCTCTTGGACCTGCCAGCAGCGCCACAACCTCATTGCCGTCTATTTTCCAGCTTAACAACGCCAATGCTCAACCGTCTGTTCCACAGGCAAACACAAAAGTAAACGATACTTCAGAAGAGGCAGCCTCTAAAGTTGGGGTGACGACAAATGGAATTTCAGGCGGCTTTGCTTTTGGTTCTGTCAGTAGAGGAACGGGTTTTGAGGCTACGGTAGTGACTTCGGCGCAGCCACCCCTTTCTGCTGGCTTTCAGGTTTCACAGGAACCGTTACCCGTTACCACTTCCGTCGATAGCAGCAAAAGCCTTGGTTTCCAGTTGCCTATAATACCAAAGCCGAGTTTTACCACGGTATCGTCGTTCACAAAGTCTCTGGCGAATGTTACTCCTCAACTTCCAGCTTTCGGAAGTATCGCCGAAGCTGTGAGGGGGGGCTTCTTGCAGGTACCAGGCTTAGATGACAAATCTACCTCTTCTCCCGCTAAGTCGTCTATTGATATAAAGATCCAGTCAACCCCGCTCATTAGTAATGGACCTGTCAGTACTATGGGTACGTCAGCTCCTTTCGGAACAGAATCAGCAAAAACGTTTTCTTTTGCTGCTGCCCCTTCGACATCTTCGTCCTTTAGCTTTATGGGCCAGAAAACCGAGTCGACTAGTAGTTCTATGCCTCTGTTTTCATTTGGTAAAGGGGGACCAGCCCAACAGCCCACCATGGGAACTGGTTTAACAAATAGTGCGCCATCGTCAAACTCTTTTTCTTTCGGAGCTAACCCACCTCCGCAAAACACCATGAAAAATGAAAGCAGTGGACCCGCTCCATTCAGCTTTCAGCCCCCAACTAGCGCTTCTAACGTATTCGGACAGTCACCGCAGCTTGGTACGACGAAGGCTGCAGACGTACCTTCGTTTAGTTTTGGCGCACCCAAGACTACTCAGCCATCAGTCGGTGGCTTTTCCTTCCCTCAAGTGACCGCGCCAGCTGTCAACACTACTGGAGGCATGTTCGGGTTTAGTAACCCTGCAAACCCCCCTCAGCCGCAGCAGCCAGCAAGTAATCCCTTTGGAAGCAGCCAGTCTGCTGGCTTTGACTTCTCGTCCGCAGCAACCATCAAATCTGGAGGCTTTAATTTCATTGGCTCTCAGTCTGTTGGGGGAAACCCCAGCCCTCTCCTAGGTGGTGCTTTTGGTGGGCAGCAACCACTATTCAATGTTGGAGCGGGTGTTTCGCCTGCTGCCCAGGTGGCTGGTCGCTCTCCAGGTCTACAAGGAAGAAAAGTGAAAAGAGCCACGAGACGACTGAAATAG

Transcript

g11948.t1

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR026054 all species →	Family	Nuclear pore complex protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14296	NUP153; nuclear pore complex protein Nup153	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.