Detailed information of g1197.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_016116768.1, PREDICTED: LOW QUALITY PROTEIN: nucleoporin p54 [Sinocyclocheilus grahami]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q7Z3B4Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2
Q8BTS4Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1
P70582Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyARID
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01974tRNA_int_endotRNA intron endonuclease, catalytic C-terminal domainDomainInterproscan
PF00188CAPCysteine-rich secretory protein familyDomainInterproscan
PF02121IP_transPhosphatidylinositol transfer proteinFamilyInterproscan
PF18437Nup54_CNup54 C-terminal interacting domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006677DomaintRNA intron endonuclease, catalytic domain-likeInterproscan
IPR036167Homologous_superfamilytRNA intron endonuclease, catalytic domain-like superfamilyInterproscan
IPR016690FamilytRNA-splicing endonuclease, SEN34 subunitInterproscan
IPR011856Homologous_superfamilytRNA endonuclease-like domain superfamilyInterproscan
IPR052787FamilyMitochondrial antiviral-signaling domain-containing proteinInterproscan
IPR014044DomainCAP domainInterproscan
IPR034113DomainGolgi-associated plant pathogenesis-related protein 1, SCP domainInterproscan
IPR001283FamilyCysteine-rich secretory protein-relatedInterproscan
IPR035940Homologous_superfamilyCAP superfamilyInterproscan
IPR001666FamilyPhosphatidylinositol transfer proteinInterproscan
IPR023393Homologous_superfamilySTART-like domain superfamilyInterproscan
IPR024864FamilyNucleoporin Nup54/Nup57/Nup44Interproscan
IPR040985DomainNup54, C-terminal interacting domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001606DomainARID DNA-binding domainInterproscan
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR051232FamilyAT-rich Interactive Domain/SWI1 Chromatin RemodelingInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13070TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATEDInterproscan
PTHR21446DUF3504 DOMAIN-CONTAINING PROTEINInterproscan
PTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDInterproscan
PTHR10658PHOSPHATIDYLINOSITOL TRANSFER PROTEINInterproscan
PTHR13000NUCLEOPORIN P54Interproscan
PTHR13964RBP-RELATEDInterproscan
PTHR19846WD40 REPEAT PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000213Molecular FunctiontRNA-intron endonuclease activityInterproscan
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0000379Biological ProcesstRNA-type intron splice site recognition and cleavageInterproscan
GO:0000214Cellular ComponenttRNA-intron endonuclease complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0005548Molecular Functionphospholipid transporter activityInterproscan
GO:0015914Biological Processphospholipid transportInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008526Molecular Functionphosphatidylinositol transfer activityInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006607Biological ProcessNLS-bearing protein import into nucleusInterproscan
GO:0006999Biological Processnuclear pore organizationInterproscan
GO:0017056Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0036228Biological Processprotein localization to nuclear inner membraneInterproscan
GO:0044613Cellular Componentnuclear pore central transport channelInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000976Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030621Molecular FunctionU4 snRNA bindingInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15323TSEN34; tRNA-splicing endonuclease subunit Sen34EC:4.6.1.16
Transfer RNA biogenesisko03016deepkoala

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