Detailed information of g12.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NRA14467.1, tRNA dihydrouridine(20/20a) synthase DusA [Oceanospirillaceae bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q87L85tRNA-dihydrouridine(20/20a) synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=dusA PE=3 SV=1
Q8CWK7tRNA-dihydrouridine(20/20a) synthase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=dusA PE=3 SV=2
Q8EAJ0tRNA-dihydrouridine(20/20a) synthase OS=Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=dusA PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01607CBM_14Chitin binding Peritrophin-A domainDomainInterproscan
PF13205Big_5Bacterial Ig-like domainDomainInterproscan
PF01384PHO4Phosphate transporter familyFamilyInterproscan
PF00071RasRas familyDomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF14580LRR_9Leucine-rich repeatRepeatInterproscan
PF08544GHMP_kinases_CGHMP kinases C terminal FamilyInterproscan
PF10509GalKase_gal_bdgGalactokinase galactose-binding signatureDomainInterproscan
PF00288GHMP_kinases_NGHMP kinases N terminal domainFamilyInterproscan
PF00153Mito_carrMitochondrial carrier proteinRepeatInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF01207DusDihydrouridine synthase (Dus)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036508Homologous_superfamilyChitin binding domain superfamilyInterproscan
IPR002557DomainChitin binding domainInterproscan
IPR032812DomainSbsA, Ig-like domainInterproscan
IPR001204FamilyPhosphate transporterInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR050227FamilyRas-related protein RabInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR044189FamilyExportin 4/7-likeInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR050576FamilyCiliary and flagellar integrity-associated proteinInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR001737FamilyRibosomal RNA adenine methyltransferase KsgA/ErmInterproscan
IPR000705FamilyGalactokinaseInterproscan
IPR006203Conserved_siteGHMP kinase, ATP-binding, conserved siteInterproscan
IPR006206FamilyMevalonate/galactokinaseInterproscan
IPR036554Homologous_superfamilyGHMP kinase, C-terminal domain superfamilyInterproscan
IPR013750DomainGHMP kinase, C-terminal domainInterproscan
IPR019539DomainGalactokinase, N-terminal domainInterproscan
IPR019741Conserved_siteGalactokinase, conserved siteInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR006204DomainGHMP kinase N-terminal domainInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR018108RepeatMitochondrial substrate/solute carrierInterproscan
IPR023395Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR002067FamilyMitochondrial carrier proteinInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR020837Conserved_siteFibrinogen, conserved siteInterproscan
IPR018517Conserved_sitetRNA-dihydrouridine synthase, conserved siteInterproscan
IPR004653FamilytRNA-dihydrouridine(20/20a) synthaseInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR035587DomainDUS-like, FMN-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11101PHOSPHATE TRANSPORTERInterproscan
PTHR47977RAS-RELATED PROTEIN RABInterproscan
PTHR12596EXPORTIN 4,7-RELATEDInterproscan
PTHR45973PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATEDInterproscan
PTHR11727DIMETHYLADENOSINE TRANSFERASEInterproscan
PTHR10457MEVALONATE KINASE/GALACTOKINASEInterproscan
PTHR24089SOLUTE CARRIER FAMILY 25Interproscan
PTHR21389P53 INDUCED PROTEINInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR42907FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008061Molecular Functionchitin bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005315Molecular Functionphosphate transmembrane transporter activityInterproscan
GO:0006817Biological Processphosphate ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0035435Biological Processphosphate ion transmembrane transportInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0005049Molecular Functionnuclear export signal receptor activityInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006611Biological Processprotein export from nucleusInterproscan
GO:0051169Biological Processnuclear transportInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000179Molecular FunctionrRNA (adenine-N6,N6-)-dimethyltransferase activityInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0006391Biological Processtranscription initiation at mitochondrial promoterInterproscan
GO:0031167Biological ProcessrRNA methylationInterproscan
GO:0034246Molecular Functionmitochondrial transcription factor activityInterproscan
GO:0004335Molecular Functiongalactokinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006012Biological Processgalactose metabolic processInterproscan
GO:0046835Biological Processcarbohydrate phosphorylationInterproscan
GO:0016301Molecular Functionkinase activityInterproscan
GO:0016773Molecular Functionphosphotransferase activity, alcohol group as acceptorInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0016236Biological ProcessmacroautophagyInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activityInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0002943Biological ProcesstRNA dihydrouridine synthesisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10104FCN; ficolin-Transfer RNA biogenesisko03016deepkoala
Domain-containing proteins not elsewhere classifiedko04990deepkoala
Amino sugar and nucleotide sugar metabolismko00520deepkoala
Cytoskeleton proteinsko04812deepkoala
Transportersko02000deepkoala
Lectinsko04091deepkoala

TOP