Detailed information of g1201.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_022800391.1, DNA-directed RNA polymerase I subunit RPA49-like [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6GLI9DNA-directed RNA polymerase I subunit RPA49 OS=Xenopus laevis OX=8355 GN=polr1e PE=2 SV=1
P51410Large ribosomal subunit protein uL6 OS=Mus musculus OX=10090 GN=Rpl9 PE=1 SV=2
P17077Large ribosomal subunit protein uL6 OS=Rattus norvegicus OX=10116 GN=Rpl9 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00347Ribosomal_L6Ribosomal protein L6DomainInterproscan
PF06870RNA_pol_I_A49A49-like RNA polymerase I associated factor FamilyInterproscan
PF000037tm_37 transmembrane sweet-taste receptor of 3 GCPRDomainInterproscan
PF17207MCM_OBMCM OB domainDomainInterproscan
PF14551MCM_NMCM N-terminal domainDomainInterproscan
PF05741zf-nanosNanos RNA binding domainFamilyInterproscan
PF01805SurpSurp moduleFamilyInterproscan
PF01585G-patchG-patch domainFamilyInterproscan
PF18139LSDAT_eukSLOG in TRPMFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020040DomainLarge ribosomal subunit protein uL6, alpha-beta domainInterproscan
IPR036789Homologous_superfamilyLarge ribosomal subunit protein uL6-like, alpha-beta domain superfamilyInterproscan
IPR000702FamilyLarge ribosomal subunit protein uL6-likeInterproscan
IPR009668FamilyRNA polymerase I associated factor, A49-likeInterproscan
IPR050726FamilyMetabotropic Glutamate ReceptorInterproscan
IPR038550Homologous_superfamilyGPCR, family 3, nine cysteines domain superfamilyInterproscan
IPR000337FamilyGPCR, family 3Interproscan
IPR017978DomainGPCR family 3, C-terminalInterproscan
IPR000595DomainCyclic nucleotide-binding domainInterproscan
IPR014710Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR018490Homologous_superfamilyCyclic nucleotide-binding domain superfamilyInterproscan
IPR043533FamilyCyclic nucleotide-binding domain-containing protein 1/2Interproscan
IPR033762DomainMCM OB domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR027925DomainMCM, N-terminal domainInterproscan
IPR031327FamilyMini-chromosome maintenance proteinInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR024161DomainZinc finger, nanos-typeInterproscan
IPR038129Homologous_superfamilyNanos domain superfamilyInterproscan
IPR008705FamilyNanos/Xcat2Interproscan
IPR000467DomainG-patch domainInterproscan
IPR000061DomainSWAP/SurpInterproscan
IPR035967Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR040169FamilySURP and G-patch domain-containing protein 1/2Interproscan
IPR050927FamilyTransient receptor potential cation channel MInterproscan
IPR041491DomainTRPM, SLOG domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9Interproscan
PTHR14440DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49Interproscan
PTHR24060METABOTROPIC GLUTAMATE RECEPTORInterproscan
PTHR23011UNCHARACTERIZEDInterproscan
PTHR11630DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBERInterproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR12887NANOS PROTEINInterproscan
PTHR23340ARGININE/SERINE RICH SPLICING FACTOR SF4/14Interproscan
PTHR13800TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0002181Biological Processcytoplasmic translationInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0001188Biological ProcessRNA polymerase I preinitiation complex assemblyInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005736Cellular ComponentRNA polymerase I complexInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0006362Biological Processtranscription elongation by RNA polymerase IInterproscan
GO:0001640Molecular Functionadenylate cyclase inhibiting G protein-coupled glutamate receptor activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007216Biological ProcessG protein-coupled glutamate receptor signaling pathwayInterproscan
GO:0051966Biological Processregulation of synaptic transmission, glutamatergicInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0000727Biological Processdouble-strand break repair via break-induced replicationInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006270Biological ProcessDNA replication initiationInterproscan
GO:0017116Molecular Functionsingle-stranded DNA helicase activityInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0042555Cellular ComponentMCM complexInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0007508Biological Processlarval heart developmentInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0061343Biological Processcell adhesion involved in heart morphogenesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0048471Cellular Componentperinuclear region of cytoplasmInterproscan
GO:0048477Biological ProcessoogenesisInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0005261Molecular Functionmonoatomic cation channel activityInterproscan
GO:0070588Biological Processcalcium ion transmembrane transportInterproscan
GO:0070838Biological Processmetal ion transportInterproscan
GO:0098655Biological Processmonoatomic cation transmembrane transportInterproscan
GO:0099604Molecular Functionligand-gated calcium channel activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13096SF4, SUGP1; splicing factor 4-Ribosomeko03011deepkoala
Messenger RNA biogenesisko03019deepkoala
Glycosaminoglycan binding proteinsko00536deepkoala
Spliceosomeko03041deepkoala

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