Detailed information of g1204.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002163488.1, RNA-binding protein 45 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8BHN5RNA-binding protein 45 OS=Mus musculus OX=10090 GN=Rbm45 PE=1 SV=1
Q8CFD1RNA-binding protein 45 OS=Rattus norvegicus OX=10116 GN=Rbm45 PE=1 SV=1
Q8IUH3RNA-binding protein 45 OS=Homo sapiens OX=9606 GN=RBM45 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00241Cofilin_ADFCofilin/tropomyosin-type actin-binding proteinDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan
PF00008EGFEGF-like domainDomainInterproscan
PF03119DNA_ligase_ZBDNAD-dependent DNA ligase C4 zinc finger domainDomainInterproscan
PF01653DNA_ligase_adenNAD-dependent DNA ligase adenylation domainDomainInterproscan
PF03120DNA_ligase_OBNAD-dependent DNA ligase OB-fold domainDomainInterproscan
PF00749tRNA-synt_1ctRNA synthetases class I (E and Q), catalytic domainDomainInterproscan
PF02540NAD_synthaseNAD synthaseDomainInterproscan
PF13525YfiOOuter membrane lipoproteinRepeatInterproscan
PF00795CN_hydrolaseCarbon-nitrogen hydrolaseFamilyInterproscan
PF01406tRNA-synt_1etRNA synthetases class I (C) catalytic domainFamilyInterproscan
PF00083Sugar_trSugar (and other) transporterFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011171FamilyGlia maturation factorInterproscan
IPR002108DomainActin-depolymerising factor homology domainInterproscan
IPR029006Homologous_superfamilyADF-H/Gelsolin-like domain superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR034207DomainRBM45, RNA recognition motif 3Interproscan
IPR034203DomainRBM45, RNA recognition motif 1Interproscan
IPR052462FamilyGlycine-rich RNA-bindingInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan
IPR050848FamilyHomeobox domain-containing transcription factorsInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR051022FamilyNotch Signaling and Cell Fate DeterminationInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR036526Homologous_superfamilyCarbon-nitrogen hydrolase superfamilyInterproscan
IPR003694FamilyNAD(+) synthetaseInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR033136Conserved_siteNAD-dependent DNA ligase, conserved siteInterproscan
IPR004149DomainZinc-finger, NAD-dependent DNA ligase C4-typeInterproscan
IPR013839DomainNAD-dependent DNA ligase, adenylationInterproscan
IPR017689FamilyOuter membrane protein assembly factor BamDInterproscan
IPR001679FamilyNAD-dependent DNA ligaseInterproscan
IPR013840DomainNAD-dependent DNA ligase, N-terminalInterproscan
IPR004150DomainNAD-dependent DNA ligase, OB-foldInterproscan
IPR020058DomainGlutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domainInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR022310DomainNAD/GMP synthaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR008925Homologous_superfamilyAminoacyl-tRNA synthetase, class I, anticodon-binding superfamilyInterproscan
IPR018239Active_siteNAD-dependent DNA ligase, active siteInterproscan
IPR039565DomainOuter membrane lipoprotein BamD-likeInterproscan
IPR003010DomainCarbon-nitrogen hydrolaseInterproscan
IPR010994Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR032678DomaintRNA synthetases class I, catalytic domainInterproscan
IPR014445FamilyGlutamine-dependent NAD(+) synthetaseInterproscan
IPR044775FamilySugar transporter ERD6/Tret1-likeInterproscan
IPR005828FamilyMajor facilitator, sugar transporter-likeInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR050549FamilyMajor Facilitator Superfamily Trehalose TransporterInterproscan
IPR020846DomainMajor facilitator superfamily domainInterproscan
IPR003663FamilySugar/inositol transporterInterproscan
IPR005829Conserved_siteSugar transporter, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11249GLIAL FACTOR NATURATION FACTORInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR48027HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATEDInterproscan
PTHR24333HOMEO BOX HB9 LIKE A-RELATEDInterproscan
PTHR24049CRUMBS FAMILY MEMBERInterproscan
PTHR23090NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASEInterproscan
PTHR48021-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0030479Cellular Componentactin cortical patchInterproscan
GO:0034316Biological Processnegative regulation of Arp2/3 complex-mediated actin nucleationInterproscan
GO:0071846Biological Processactin filament debranchingInterproscan
GO:0071933Molecular FunctionArp2/3 complex bindingInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0003952Molecular FunctionNAD+ synthase (glutamine-hydrolyzing) activityInterproscan
GO:0004359Molecular Functionglutaminase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0009435Biological ProcessNAD biosynthetic processInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003911Molecular FunctionDNA ligase (NAD+) activityInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0043039Biological ProcesstRNA aminoacylationInterproscan
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0006807Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0008643Biological Processcarbohydrate transportInterproscan
GO:0051119Molecular Functionsugar transmembrane transporter activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08145SLC2A8, GLUT8; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8-Domain-containing proteins not elsewhere classifiedko04990deepkoala
Transportersko02000deepkoala

TOP