Gene detail

Detailed information of g12040.t1.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_020625966.1, geranylgeranyl transferase type-1 subunit beta-like [Orbicella faveolata]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EAD5	Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus OX=9913 GN=PGGT1B PE=2 SV=1
P53609	Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens OX=9606 GN=PGGT1B PE=1 SV=2
P53610	Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus OX=10116 GN=Pggt1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005070 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00432 all species →	Prenyltrans	Prenyltransferase and squalene oxidase repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008930 all species →	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan
IPR001330 all species →	Repeat	PFTB repeat	Interproscan
IPR041960 all species →	Family	Geranylgeranyl transferase type-1 subunit beta	Interproscan
IPR045089 all species →	Family	Prenyltransferase subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11774 all species →	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004661 all species →	Molecular Function	protein geranylgeranyltransferase activity	Interproscan
GO:0005953 all species →	Cellular Component	CAAX-protein geranylgeranyltransferase complex	Interproscan
GO:0018344 all species →	Biological Process	protein geranylgeranylation	Interproscan
GO:0004662 all species →	Molecular Function	CAAX-protein geranylgeranyltransferase activity	Interproscan
GO:0008318 all species →	Molecular Function	protein prenyltransferase activity	Interproscan
GO:0018342 all species →	Biological Process	protein prenylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11713	PGTB1; geranylgeranyl transferase type-1 subunit beta	EC:2.5.1.59	Prenyltransferases	ko01006	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.