Detailed information of g12068.t1 in Montipora capitata

Genomic Location: Sc0000378:257387...262508
NR annotation: XP_015773621.1, PREDICTED: serine--tRNA ligase, cytoplasmic-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P26636Serine--tRNA ligase, cytoplasmic OS=Cricetulus griseus OX=10029 GN=SARS1 PE=2 SV=2
Q6P799Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Sars1 PE=1 SV=3
Q4R4U9Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis OX=9541 GN=SARS1 PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003530 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00587
all species →		tRNA-synt_2btRNA synthetase class II core domain (G, H, P, S and T)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR002317
all species →		FamilySerine-tRNA ligase, type1Interproscan
IPR002314
all species →		DomainAminoacyl-tRNA synthetase, class II (G/ P/ S/T)Interproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11778
all species →		SERYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004828
all species →		Molecular Functionserine-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006434
all species →		Biological Processseryl-tRNA aminoacylationInterproscan
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g12068.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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