Gene detail

Detailed information of g12095.t1 in Acropora digitifera

Genomic Location: chr5Alt:28644772...28662199
NR annotation: XP_044176573.1, PDZ domain-containing protein 8-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g12095.t1

ATGGTTATAGCTCTTATTCTCGCCTTTTTGATCGGAGTATTTTCTGTTTTGCTTCTCGAGGGCATTTTTCTTTACAAATGGTGGACATCAAAGCCAGAAGATGACCGAAAACTGTACCCCAAACGCACGAAAGTCACCAACCCTAAGTTCATTGCAGACTATATCATGAAAGATGGTGCTTCTGAAGAAGAATCATGCTTGAGCTTAAATTTCCTACTGGCTTTTTTATGGAGAGAATGGCGAGATTCCCCCAAAACAAAATCATTCCTTTTAGGAAGAATGAACTCAGAGTTGACAGAGCTCATAAAGAGCAAAGCTGTAAGCAAAGTGATTGAGCAAATAACCATTGATGAACTATCCCTGGGGACATCTTTGCCTATCATTAAAGGTGCAACAGTGATGAAGATAGACACAAAAGATCCTAAGGAGGTCCCCCAGGAGTTGGACATTGCTCTTGACCTAGAATACTCAGGGGGCTGCCACATTGCAATGCAAGTTGATCTTGTTTTCAACAAGTCTGTGTACTTGGCAGTCAAGTTGGTTCATCTCCAAGGTCGTGCTAGGCTTCAGTTTAGGAGACACCCTCTCGCCCATTGGTCTTTTGCATTCTATGAGGAACCAGAAGTTGAATTTCAAGCAGAATCTCAGTTTGAAGGTAAAAACCTTCCACAGCTGACCTCCCTCATAACAAACCATCTTCGCAAATCCATTCAAAAGAAGCACACCCTTCCTAACTACAAAGTGAGGTACAATCCATTCTTTGAGCAGCCTTCACCTCAAGATGAAACCCAGGAGGTCTATGTCCATGACAGTCTGGTTACTGTTGGTGCACTAGATGTCACAGTGGTGGGATGCACTCGTCTCCCTGAATTAGAAAATTGGGCATTGCAGTATTGCACCCTTTCTGTGGACATGCTGCCCTGGGGTCGACTTGCAAAGAACAGAAGAGCCATGTGGCCTACATTTGAGGTTACAATAAGTCGAGAGACCAATGATATTTCATTTGGTCTGACACTTAAAGAGGTCAATGATGGTGAATTTGGTAAAACAATTGTAATTCAGACTATAGTCACCGACTCACCGGCTTATTGTGCTGGGATCATTGCAAAAGACATATTTCTGGCCATAGATGGACACAAGACAGACTCACTGAAACAGGCTGCTAAGATGATCAAGAATAAAAACAGGTTCACAGCAACAGTTCAGCGACCTCCGACAAGACTAACCCAGCAACTGAACCAAGATGTTCCAGACAAAGAACTTGGGAAGACAGTGGTGGACTATAAAAATGTGGCACTGGATAGTAACAGTGAGTCGGAGGATGAATTTGTCAACATCGTGGTGCCATTGTTTGAACACGCGGACCGTGAAATGGCCAAATCTGCTGTGCAAGAAATACTGTTAACGAGCACAGATCTAAGACAACAGGCTGAGAAGAAGCCAAAATTAAAACAAGGTGAAAAGGTTCCTCTTGGTACTGCAAATACGGAATCTGGTGTTGAAGCAAAACCTACAGGGACTGGTGATCAAGTGAGGAGGAAAACCAAGATGATTGCCAAGTTTGGTGGCTTAGAACCTCAGCGTTACGAAGATATAAAGGAAATTGTGGCAGCCGAGACAGACCCGAAAAGTTTCGGGACTTTTGAGAAACAGGCCCCAGGAGCAGATCAAAGGGCAATTGGTTTGACATCCGCTGACGAAAAGCAAGATTCACCTCGGGTTCTAAGAAAGACTTCTGACCAGGTGACTCAGGACGTGGACAAGAAAGTTGTGTTTCCTAGCAGCACGAATGATTCACCCGCCCAAGGAAACGATCAAGTGTCCCCGCCTTCTCAGACAGCAGTGGATGCGCCAGACCACGTGAAAACTAGGCTTGTACCTGCAAGTTTGGAACCAGTGTGGAGTGAAACTGTCAAGTTCGATATCCTCCAAGGGCATCAATATCTCAATGTCTGTATTTGGTGCAAGTTCCAAGACAAGAATGAGAAGGACGCACTGTTGGGCTATATAAGCATACCCTTGATGGATATTGCTTGGCAGTGCCTGGCTTTGTCGTCAAAGAGACATGAGCAATGTTACATGTTGGTATCTCCTCACTCGGACAGAGTCATTTCAAATATGCCATACCTTCGTAATAATCCTTCTCTCAAAGATCAGCCTTGTTGCGGTGATGTCACTCTGATATTTCGTCACACACCGTCATTGGCCGATTGTGACGAGACCATATTGGAGAAACCGGACTTCCTTGCAACATCAGAACTCAAGGATGAAAGCCAGTTAAAAGACACTCTTGAAAGCCTGGAGCCCCCAAAACATCAGTTTAGTTTGACGCAGTTCCATTTTCCTACACGATGCAGCTACTGCAATAAAAAGGTTTGGACTAAAGTAGCCTTCCAGTGCAGAATCTGCGCTATGATTTGTCATAAGAAATGCCTTCAAAGCTGTATGAGATACACGCACTGTATCCATGAAACAAAGTCAACGCCAAGATGGTTTTCAAAAATGCCACCCAAGCGAGGAAAGAACAAGACAAAGAAGAAAAAACTGCAGCAACAAGACTGTAGCAGTGCAGAGGAATCTATCGCAGAAGGCTCCAGTGAATCAGAGCTCGATCGTAACATTAAAAAAACAGAGAAGTGTCCGGATAAAGAAGTAAAGAAACAGTCTGGTGCCAATGACTGTGACCAAACGGAGACCAGCAATGAAATCGAGTCGGGAAGTAGAGAACAAACAGCGAAAGCAAGTGAAGATGAGTGGATAATGCAGGCGGATAATATTACAGTGGCTTCAGAAAGAGTGAGAGAGGCTGGTAGGGAGCTGTTTTCTAATCTTCCGTTAGACGCTCGCAAAAGCAAACTGGACGACATGATGAACAAATTACAAGTGGAAATTGATGAAGAGAGCGAAACGCGGACAGAGTTGTATGAGAAGCGAAGCAAAGTCAAGGATAAGAAGCAAAAAATAGCCATTGAATCGCTTCTGGAGAAATCTGAGGAGAGGGGTCAAGCGTTAGCAATGTTGATGTTGCAGTACTGTTCTGGATATCAAAGCTGTGTTGAAGCCGAAGAATCGGACCGATATCAACTCTGA

Transcript

chr5Alt.g12095.t1

GTCCACCGCAATTTTTTGTAAGAACATAAACATGGTGCCTTGAAGGAGGTGTGCTGATGGTTATAGCTCTTATTCTCGCCTTTTTGATCGGAGTATTTTCTGTTTTGCTTCTCGAGGGCATTTTTCTTTACAAATGGTGGACATCAAAGCCAGAAGATGACCGAAAACTGTACCCCAAACGCACGAAAGTCACCAACCCTAAGTTCATTGCAGACTATATCATGAAAGATGGTGCTTCTGAAGAAGAATCATGCTTGAGCTTAAATTTCCTACTGGCTTTTTTATGGAGAGAATGGCGAGATTCCCCCAAAACAAAATCATTCCTTTTAGGAAGAATGAACTCAGAGTTGACAGAGCTCATAAAGAGCAAAGCTGTAAGCAAAGTGATTGAGCAAATAACCATTGATGAACTATCCCTGGGGACATCTTTGCCTATCATTAAAGGTGCAACAGTGATGAAGATAGACACAAAAGATCCTAAGGAGGTCCCCCAGGAGTTGGACATTGCTCTTGACCTAGAATACTCAGGGGGCTGCCACATTGCAATGCAAGTTGATCTTGTTTTCAACAAGTCTGTGTACTTGGCAGTCAAGTTGGTTCATCTCCAAGGTCGTGCTAGGCTTCAGTTTAGGAGACACCCTCTCGCCCATTGGTCTTTTGCATTCTATGAGGAACCAGAAGTTGAATTTCAAGCAGAATCTCAGTTTGAAGGTAAAAACCTTCCACAGCTGACCTCCCTCATAACAAACCATCTTCGCAAATCCATTCAAAAGAAGCACACCCTTCCTAACTACAAAGTGAGGTACAATCCATTCTTTGAGCAGCCTTCACCTCAAGATGAAACCCAGGAGGTCTATGTCCATGACAGTCTGGTTACTGTTGGTGCACTAGATGTCACAGTGGTGGGATGCACTCGTCTCCCTGAATTAGAAAATTGGGCATTGCAGTATTGCACCCTTTCTGTGGACATGCTGCCCTGGGGTCGACTTGCAAAGAACAGAAGAGCCATGTGGCCTACATTTGAGGTTACAATAAGTCGAGAGACCAATGATATTTCATTTGGTCTGACACTTAAAGAGGTCAATGATGGTGAATTTGGTAAAACAATTGTAATTCAGACTATAGTCACCGACTCACCGGCTTATTGTGCTGGGATCATTGCAAAAGACATATTTCTGGCCATAGATGGACACAAGACAGACTCACTGAAACAGGCTGCTAAGATGATCAAGAATAAAAACAGGTTCACAGCAACAGTTCAGCGACCTCCGACAAGACTAACCCAGCAACTGAACCAAGATGTTCCAGACAAAGAACTTGGGAAGACAGTGGTGGACTATAAAAATGTGGCACTGGATAGTAACAGTGAGTCGGAGGATGAATTTGTCAACATCGTGGTGCCATTGTTTGAACACGCGGACCGTGAAATGGCCAAATCTGCTGTGCAAGAAATACTGTTAACGAGCACAGATCTAAGACAACAGGCTGAGAAGAAGCCAAAATTAAAACAAGGTGAAAAGGTTCCTCTTGGTACTGCAAATACGGAATCTGGTGTTGAAGCAAAACCTACAGGGACTGGTGATCAAGTGAGGAGGAAAACCAAGATGATTGCCAAGTTTGGTGGCTTAGAACCTCAGCGTTACGAAGATATAAAGGAAATTGTGGCAGCCGAGACAGACCCGAAAAGTTTCGGGACTTTTGAGAAACAGGCCCCAGGAGCAGATCAAAGGGCAATTGGTTTGACATCCGCTGACGAAAAGCAAGATTCACCTCGGGTTCTAAGAAAGACTTCTGACCAGGTGACTCAGGACGTGGACAAGAAAGTTGTGTTTCCTAGCAGCACGAATGATTCACCCGCCCAAGGAAACGATCAAGTGTCCCCGCCTTCTCAGACAGCAGTGGATGCGCCAGACCACGTGAAAACTAGGCTTGTACCTGCAAGTTTGGAACCAGTGTGGAGTGAAACTGTCAAGTTCGATATCCTCCAAGGGCATCAATATCTCAATGTCTGTATTTGGTGCAAGTTCCAAGACAAGAATGAGAAGGACGCACTGTTGGGCTATATAAGCATACCCTTGATGGATATTGCTTGGCAGTGCCTGGCTTTGTCGTCAAAGAGACATGAGCAATGTTACATGTTGGTATCTCCTCACTCGGACAGAGTCATTTCAAATATGCCATACCTTCGTAATAATCCTTCTCTCAAAGATCAGCCTTGTTGCGGTGATGTCACTCTGATATTTCGTCACACACCGTCATTGGCCGATTGTGACGAGACCATATTGGAGAAACCGGACTTCCTTGCAACATCAGAACTCAAGGATGAAAGCCAGTTAAAAGACACTCTTGAAAGCCTGGAGCCCCCAAAACATCAGTTTAGTTTGACGCAGTTCCATTTTCCTACACGATGCAGCTACTGCAATAAAAAGGTTTGGACTAAAGTAGCCTTCCAGTGCAGAATCTGCGCTATGATTTGTCATAAGAAATGCCTTCAAAGCTGTATGAGATACACGCACTGTATCCATGAAACAAAGTCAACGCCAAGATGGTTTTCAAAAATGCCACCCAAGCGAGGAAAGAACAAGACAAAGAAGAAAAAACTGCAGCAACAAGACTGTAGCAGTGCAGAGGAATCTATCGCAGAAGGCTCCAGTGAATCAGAGCTCGATCGTAACATTAAAAAAACAGAGAAGTGTCCGGATAAAGAAGTAAAGAAACAGTCTGGTGCCAATGACTGTGACCAAACGGAGACCAGCAATGAAATCGAGTCGGGAAGTAGAGAACAAACAGCGAAAGCAAGTGAAGATGAGTGGATAATGCAGGCGGATAATATTACAGTGGCTTCAGAAAGAGTGAGAGAGGCTGGTAGGGAGCTGTTTTCTAATCTTCCGTTAGACGCTCGCAAAAGCAAACTGGACGACATGATGAACAAATTACAAGTGGAAATTGATGAAGAGAGCGAAACGCGGACAGAGTTGTATGAGAAGCGAAGCAAAGTCAAGGATAAGAAGCAAAAAATAGCCATTGAATCGCTTCTGGAGAAATCTGAGGAGAGGGGTCAAGCGTTAGCAATGTTGATGTTGCAGTACTGTTCTGGATATCAAAGCTGTGTTGAAGCCGAAGAATCGGACCGATATCAACTCTGATCTGCTGCATCGCACGTGAAATGTCACATCAGCCGAACACAAGCAAAAGGGAGACCACGATTAGTAGCCTTGTTCGTTCGCCAAACTTAGCCCCTGGGGAGGGAGGGTTGAATTATCGGAATTCTTCAAATATGCTAATGTATAATCTTTTAAATATACGAATATCTTATCATTCAAGCATGACACTTTCGCAGTATAAAGTTTTAGTTTGACATTTTCATCAACAAGTTCTTGAAAGAGCTACGGAATCCAATTGTTCAGTTGTTTTTCATTCGCAAAGGTTCCGGAATTCTTATTGATAATTGCAATAGCTATAACCATTGTTGCTGTCATCTTCGTCATGATTTTATCTCAAATTTGAGCTAATTTGTTTGAGTACAACTGACTCAACTAATGGAGAGACTGCAATTACAAGAGGAATTAAAAATCACAAAATCCAGTTTCCACAATGTAAAATAATAATGACGTTGATTCCCTTTTCGATAACCATATGGAAAGAGTCTTGACCATGACATTAATTTTCCATTATTTTAAGAGGGAGATAATGAGAACGACATTTCTGACAAACGGACTCAAATTTGCCCTTTGCAGAAAATAGTCGAAGCTTCTCTAGAGAAGCTGTTAAGGATGATAATTTCCAGAATTTTCAATGATGTTACGAAGAATCCCGCTGTTTGACGTAATCTTCAAATTGCGAATCCTAGTCTTTTGTCTTCCGAAGGAAAACATGGTGTCTTCACTGGGCAAAATAATTAAAAATCATCACAAAGAAGTTAGCTATTGAATCCTTTCGTTAATTTTTTCGGTTATTAAGAATGACATATTTATCTCAGACATATCGCCTGTAAATTTTGAAATAAAGATATCATGAGCGTGAGGGCGATTTGGAAATAGTGAAGTTCATGGCTCATGTCAGTTTACATGACAGTTTGCATGAGATGACTAGCTAGATGACACGCATGGAGAATTAACGCAACAAACTTGACAATAAACGTTTAGTTATGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NEN9	PDZ domain-containing protein 8 OS=Homo sapiens OX=9606 GN=PDZD8 PE=1 SV=1
B9EJ80	PDZ domain-containing protein 8 OS=Mus musculus OX=10090 GN=Pdzd8 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR039275 all species →	Family	PDZ domain-containing protein 8	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21519 all species →	PDZ DOMAIN-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0044233 all species →	Cellular Component	mitochondria-associated endoplasmic reticulum membrane contact site	Interproscan
GO:0051560 all species →	Biological Process	mitochondrial calcium ion homeostasis	Interproscan
GO:1990456 all species →	Biological Process	mitochondrion-endoplasmic reticulum membrane tethering	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24060	PDZD8; PDZ domain-containing protein 8	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.