Gene detail

Detailed information of g1214.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_020612287.1, laminin subunit gamma-1-like [Orbicella faveolata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JHV6	Laminin subunit beta-4 OS=Danio rerio OX=7955 GN=lamb4 PE=2 SV=1
Q90922	Netrin-1 OS=Gallus gallus OX=9031 GN=NTN1 PE=1 SV=1
O09118	Netrin-1 OS=Mus musculus OX=10090 GN=Ntn1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000026 (this species only)
Orthogroup (gene family)	OG0000924 (this species only)
Orthogroup (gene family)	OG0001012 (this species only)
Orthogroup (gene family)	OG0001107 (this species only)
Orthogroup (gene family)	OG0001807 (this species only)
Orthogroup (gene family)	OG0004443 (this species only)
Orthogroup (gene family)	OG0005753 (this species only)
Orthogroup (gene family)	OG0016448 (this species only)
Orthogroup (gene family)	OG0018251 (this species only)
Orthogroup (gene family)	OG0024483 (this species only)
Orthogroup (gene family)	OG0025837 (this species only)
Orthogroup (gene family)	OG0035731 (this species only)
Orthogroup (gene family)	OG0059549 (this species only)
Orthogroup (gene family)	OG0080351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00055 all species →	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF02142 all species →	MGS	MGS-like domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02787 all species →	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan
PF00988 all species →	CPSase_sm_chain	Carbamoyl-phosphate synthase small chain, CPSase domain	Domain	Interproscan
PF14968 all species →	CCDC84	Coiled coil protein 84	Coiled-coil	Interproscan
PF15963 all species →	Myb_DNA-bind_7	Myb DNA-binding like	Domain	Interproscan
PF04989 all species →	RMNT_CmcI	Rhamnosyl O-methyltransferase/CmcI	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02958 all species →	EcKL	Ecdysteroid kinase-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR008211 all species →	Domain	Laminin, N-terminal	Interproscan
IPR050440 all species →	Family	Laminin/Netrin Extracellular Matrix	Interproscan
IPR036897 all species →	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR006275 all species →	Family	Carbamoyl-phosphate synthase, large subunit	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR002474 all species →	Domain	Carbamoyl-phosphate synthase small subunit, N-terminal domain	Interproscan
IPR036480 all species →	Homologous_superfamily	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR005480 all species →	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR005483 all species →	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR028015 all species →	Family	CCDC84-like	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR039467 all species →	Domain	Transcription factor TFIIIB component B'', Myb domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007072 all species →	Family	Rhamnosyl O-methyltransferase	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR004119 all species →	Family	Ecdysteroid kinase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10574 all species →	NETRIN/LAMININ-RELATED	Interproscan
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22929 all species →	RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR24161 all species →	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan
GO:0000126 all species →	Cellular Component	transcription factor TFIIIB complex	Interproscan
GO:0001156 all species →	Molecular Function	TFIIIC-class transcription factor complex binding	Interproscan
GO:0070898 all species →	Biological Process	RNA polymerase III preinitiation complex assembly	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g1214.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.