Detailed information of g1214.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020612287.1, laminin subunit gamma-1-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8JHV6Laminin subunit beta-4 OS=Danio rerio OX=7955 GN=lamb4 PE=2 SV=1
Q90922Netrin-1 OS=Gallus gallus OX=9031 GN=NTN1 PE=1 SV=1
O09118Netrin-1 OS=Mus musculus OX=10090 GN=Ntn1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00055Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF00053Laminin_EGFLaminin EGF domainDomainInterproscan
PF02142MGSMGS-like domainDomainInterproscan
PF02786CPSase_L_D2Carbamoyl-phosphate synthase L chain, ATP binding domainDomainInterproscan
PF02787CPSase_L_D3Carbamoyl-phosphate synthetase large chain, oligomerisation domainDomainInterproscan
PF00988CPSase_sm_chainCarbamoyl-phosphate synthase small chain, CPSase domainDomainInterproscan
PF14968CCDC84Coiled coil protein 84Coiled-coilInterproscan
PF15963Myb_DNA-bind_7Myb DNA-binding likeDomainInterproscan
PF04989RMNT_CmcIRhamnosyl O-methyltransferase/CmcIFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF02958EcKLEcdysteroid kinase-like familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002049DomainLaminin-type EGF domainInterproscan
IPR008211DomainLaminin, N-terminalInterproscan
IPR050440FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR036897Homologous_superfamilyCarbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamilyInterproscan
IPR006275FamilyCarbamoyl-phosphate synthase, large subunitInterproscan
IPR011607DomainMethylglyoxal synthase-like domainInterproscan
IPR011761DomainATP-grasp foldInterproscan
IPR002474DomainCarbamoyl-phosphate synthase small subunit, N-terminal domainInterproscan
IPR036480Homologous_superfamilyCarbamoyl-phosphate synthase small subunit, N-terminal domain superfamilyInterproscan
IPR016185Homologous_superfamilyPre-ATP-grasp domain superfamilyInterproscan
IPR036914Homologous_superfamilyMethylglyoxal synthase-like domain superfamilyInterproscan
IPR005479DomainCarbamoyl-phosphate synthetase large subunit-like, ATP-binding domainInterproscan
IPR005480DomainCarbamoyl-phosphate synthetase, large subunit oligomerisation domainInterproscan
IPR005483DomainCarbamoyl-phosphate synthase large subunit, CPSase domainInterproscan
IPR013815Homologous_superfamilyATP-grasp fold, subdomain 1Interproscan
IPR028015FamilyCCDC84-likeInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR039467DomainTranscription factor TFIIIB component B'', Myb domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR007072FamilyRhamnosyl O-methyltransferaseInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR004119FamilyEcdysteroid kinase-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574NETRIN/LAMININ-RELATEDInterproscan
PTHR11405CARBAMOYLTRANSFERASE FAMILY MEMBERInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22929RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR BInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR24161ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0009887Biological Processanimal organ morphogenesisInterproscan
GO:0009888Biological Processtissue developmentInterproscan
GO:0006807Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006541Biological Processglutamine metabolic processInterproscan
GO:0000126Cellular Componenttranscription factor TFIIIB complexInterproscan
GO:0001156Molecular FunctionTFIIIC-class transcription factor complex bindingInterproscan
GO:0070898Biological ProcessRNA polymerase III preinitiation complex assemblyInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0008610Biological Processlipid biosynthetic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

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