Gene detail

Detailed information of g1218.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CFW93854.1, partial mRNA for homeobox transcription factor Six 3-6 (six 3-6 gene), partial [Aurelia aurita]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O73916	Homeobox protein SIX3 OS=Oryzias latipes OX=8090 GN=six3 PE=1 SV=1
O93307	Homeobox protein SIX6 OS=Gallus gallus OX=9031 GN=SIX6 PE=2 SV=1
O95475	Homeobox protein SIX6 OS=Homo sapiens OX=9606 GN=SIX6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000015 (this species only)
Orthogroup (gene family)	OG0000102 (this species only)
Orthogroup (gene family)	OG0000323 (this species only)
Orthogroup (gene family)	OG0000445 (this species only)
Orthogroup (gene family)	OG0000714 (this species only)
Orthogroup (gene family)	OG0001129 (this species only)
Orthogroup (gene family)	OG0001689 (this species only)
Orthogroup (gene family)	OG0002671 (this species only)
Orthogroup (gene family)	OG0003059 (this species only)
Orthogroup (gene family)	OG0003095 (this species only)
Orthogroup (gene family)	OG0009109 (this species only)
Orthogroup (gene family)	OG0041277 (this species only)
Orthogroup (gene family)	OG0059469 (this species only)
Orthogroup (gene family)	OG0171473 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00378 all species →	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF00887 all species →	ACBP	Acyl CoA binding protein	Domain	Interproscan
PF02882 all species →	THF_DHG_CYH_C	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	Domain	Interproscan
PF00743 all species →	FMO-like	Flavin-binding monooxygenase-like	Family	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF16878 all species →	SIX1_SD	Transcriptional regulator, SIX1, N-terminal SD domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF05041 all species →	Pecanex_C	Pecanex protein (C-terminus)	Family	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR051053 all species →	Family	Enoyl-CoA hydratase/isomerase and chromodomain-containing protein	Interproscan
IPR035984 all species →	Homologous_superfamily	Acyl-CoA binding protein superfamily	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR022408 all species →	Conserved_site	Acyl-CoA-binding protein, ACBP, conserved site	Interproscan
IPR000582 all species →	Domain	Acyl-CoA-binding protein, ACBP	Interproscan
IPR014748 all species →	Homologous_superfamily	Enoyl-CoA hydratase, C-terminal	Interproscan
IPR001753 all species →	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR020631 all species →	Domain	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR020946 all species →	Family	Flavin monooxygenase-like	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050346 all species →	Family	Flavin-containing Monooxygenases	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR031701 all species →	Domain	Homeobox protein SIX1, N-terminal SD domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR051226 all species →	Family	Protein Phosphatase 1 Regulatory Subunit	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR039797 all species →	Family	Protein Pecanex	Interproscan
IPR007735 all species →	Domain	Pecanex, C-terminal	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR000922 all species →	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47018 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR43684 all species →	-	Interproscan
PTHR48099 all species →	C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED	Interproscan
PTHR47501 all species →	TRANSPOSASE-RELATED	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23023 all species →	DIMETHYLANILINE MONOOXYGENASE	Interproscan
PTHR10390 all species →	HOMEOBOX PROTEIN SIX	Interproscan
PTHR24179 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12	Interproscan
PTHR12372 all species →	PECANEX	Interproscan
PTHR43313 all species →	SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000062 all species →	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0004477 all species →	Molecular Function	methenyltetrahydrofolate cyclohydrolase activity	Interproscan
GO:0004488 all species →	Molecular Function	methylenetetrahydrofolate dehydrogenase (NADP+) activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035999 all species →	Biological Process	tetrahydrofolate interconversion	Interproscan
GO:0004499 all species →	Molecular Function	N,N-dimethylaniline monooxygenase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004857 all species →	Molecular Function	enzyme inhibitor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019208 all species →	Molecular Function	phosphatase regulator activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008202 all species →	Biological Process	steroid metabolic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13239	ECI2, PECI; Delta3-Delta2-enoyl-CoA isomerase	EC:5.3.3.8	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.