Detailed information of g122.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027060156.1, uncharacterized protein LOC113686706 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q15386Ubiquitin-protein ligase E3C OS=Homo sapiens OX=9606 GN=UBE3C PE=1 SV=3
Q80U95Ubiquitin-protein ligase E3C OS=Mus musculus OX=10090 GN=Ube3c PE=1 SV=2
Q8RWB8E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1
Gene familySubfamily
Transcription Factors Familyzf-CCCH
Ubiquitin FamilyE3|E3 activity|HECT
Transcription Factors FamilyAP-2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan
PF03299TF_AP-2Transcription factor AP-2FamilyInterproscan
PF00432PrenyltransPrenyltransferase and squalene oxidase repeatRepeatInterproscan
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF00282Pyridoxal_deCPyridoxal-dependent decarboxylase conserved domainDomainInterproscan
PF00646F-boxF-box domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR003609DomainPAN/Apple domainInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR004979FamilyTranscription factor AP-2Interproscan
IPR013854DomainTranscription factor AP-2, C-terminalInterproscan
IPR041960FamilyGeranylgeranyl transferase type-1 subunit betaInterproscan
IPR008930Homologous_superfamilyTerpenoid cyclases/protein prenyltransferase alpha-alpha toroidInterproscan
IPR045089FamilyPrenyltransferase subunit betaInterproscan
IPR001330RepeatPFTB repeatInterproscan
IPR000569DomainHECT domainInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR044611FamilyUbiquitin-protein ligase E3A/B/C-likeInterproscan
IPR000727DomainTarget SNARE coiled-coil homology domainInterproscan
IPR039899DomainBET1, SNARE domainInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR002129FamilyPyridoxal phosphate-dependent decarboxylaseInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR021115Binding_sitePyridoxal-phosphate binding siteInterproscan
IPR001810DomainF-box domainInterproscan
IPR036047Homologous_superfamilyF-box-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10812TRANSCRIPTION FACTOR AP-2Interproscan
PTHR11774GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITInterproscan
PTHR45700UBIQUITIN-PROTEIN LIGASE E3CInterproscan
PTHR12791GOLGI SNARE BET1-RELATEDInterproscan
PTHR45677GLUTAMATE DECARBOXYLASE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0042127Biological Processregulation of cell population proliferationInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan
GO:0004661Molecular Functionprotein geranylgeranyltransferase activityInterproscan
GO:0005953Cellular ComponentCAAX-protein geranylgeranyltransferase complexInterproscan
GO:0018344Biological Processprotein geranylgeranylationInterproscan
GO:0004662Molecular FunctionCAAX-protein geranylgeranyltransferase activityInterproscan
GO:0008318Molecular Functionprotein prenyltransferase activityInterproscan
GO:0018342Biological Processprotein prenylationInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005484Molecular FunctionSNAP receptor activityInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0031201Cellular ComponentSNARE complexInterproscan
GO:0048280Biological Processvesicle fusion with Golgi apparatusInterproscan
GO:0016830Molecular Functioncarbon-carbon lyase activityInterproscan
GO:0019752Biological Processcarboxylic acid metabolic processInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0016831Molecular Functioncarboxy-lyase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22909ZC3H13; zinc finger CCCH domain-containing protein 13-Ubiquitin systemko04121deepkoala
Prenyltransferasesko01006deepkoala
Membrane traffickingko04131deepkoala
Messenger RNA biogenesisko03019deepkoala

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