Detailed information of g1220.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3171996.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P49754Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens OX=9606 GN=VPS41 PE=1 SV=3
Q5KU39Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus OX=10090 GN=Vps41 PE=1 SV=1
E7F590Vacuolar protein sorting-associated protein 41 homolog OS=Danio rerio OX=7955 GN=vps41 PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-BED

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF06978POP1_NRibonucleases P/MRP protein subunit POP1, N-terminalDomainInterproscan
PF18293Caprin-1_dimerCaprin-1 dimerization domainDomainInterproscan
PF02892zf-BEDBED zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR052065FamilyComplement and asymmetry regulatorInterproscan
IPR009723DomainPop1, N-terminalInterproscan
IPR039182FamilyRibonucleases P/MRP protein subunit Pop1Interproscan
IPR028816FamilyCaprinInterproscan
IPR041637DomainCaprin-1 dimerization domainInterproscan
IPR045111FamilyVacuolar protein sorting-associated protein Vps41/Vps8Interproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR003656DomainZinc finger, BED-typeInterproscan
IPR052717FamilyVacuolar processing and transposase activity regulatorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR22906PROPERDINInterproscan
PTHR22731RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1Interproscan
PTHR22922GPI-ANCHORED PROTEIN P137Interproscan
PTHR12616VACUOLAR PROTEIN SORTING VPS41Interproscan
PTHR46169DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM AInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000172Cellular Componentribonuclease MRP complexInterproscan
GO:0001682Biological ProcesstRNA 5'-leader removalInterproscan
GO:0005655Cellular Componentnucleolar ribonuclease P complexInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005770Cellular Componentlate endosomeInterproscan
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0009267Biological Processcellular response to starvationInterproscan
GO:0016236Biological ProcessmacroautophagyInterproscan
GO:0030897Cellular ComponentHOPS complexInterproscan
GO:0034058Biological Processendosomal vesicle fusionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

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