Gene detail

Detailed information of g1221.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_048239142.1, pseudouridylate synthase 7 homolog [Haliotis rufescens]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96PZ0	Pseudouridylate synthase 7 homolog OS=Homo sapiens OX=9606 GN=PUS7 PE=1 SV=2
Q08DI8	Pseudouridylate synthase 7 homolog OS=Bos taurus OX=9913 GN=PUS7 PE=2 SV=1
Q91VU7	Pseudouridylate synthase 7 homolog OS=Mus musculus OX=10090 GN=Pus7 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000200 (this species only)
Orthogroup (gene family)	OG0000247 (this species only)
Orthogroup (gene family)	OG0000696 (this species only)
Orthogroup (gene family)	OG0001159 (this species only)
Orthogroup (gene family)	OG0001268 (this species only)
Orthogroup (gene family)	OG0001686 (this species only)
Orthogroup (gene family)	OG0001940 (this species only)
Orthogroup (gene family)	OG0002070 (this species only)
Orthogroup (gene family)	OG0002148 (this species only)
Orthogroup (gene family)	OG0003260 (this species only)
Orthogroup (gene family)	OG0006799 (this species only)
Orthogroup (gene family)	OG0015118 (this species only)
Orthogroup (gene family)	OG0023243 (this species only)
Orthogroup (gene family)	OG0172507 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan
PF04721 all species →	PAW	PNGase C-terminal domain, mannose-binding module PAW	Domain	Interproscan
PF01142 all species →	TruD	tRNA pseudouridine synthase D (TruD)	Family	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF03029 all species →	ATP_bind_1	Conserved hypothetical ATP binding protein	Domain	Interproscan
PF03067 all species →	LPMO_10	Lytic polysaccharide mono-oxygenase, cellulose-degrading	Domain	Interproscan
PF08457 all species →	Sfi1	Sfi1 spindle body protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR038680 all species →	Homologous_superfamily	PAW domain superfamily	Interproscan
IPR006588 all species →	Domain	Peptide N glycanase, PAW domain	Interproscan
IPR001656 all species →	Family	Pseudouridine synthase, TruD	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR020119 all species →	Conserved_site	Pseudouridine synthase TruD, conserved site	Interproscan
IPR042214 all species →	Homologous_superfamily	Pseudouridine synthase, TruD, catalytic domain	Interproscan
IPR011760 all species →	Domain	Pseudouridine synthase, TruD, insertion domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR045054 all species →	Family	Prolyl 4-hydroxylase	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR049680 all species →	Family	Solute carrier family 49-like	Interproscan
IPR004130 all species →	Family	GPN-loop GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004302 all species →	Domain	Cellulose/chitin-binding protein, N-terminal	Interproscan
IPR013665 all species →	Domain	Sfi1 spindle body	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan
PTHR13326 all species →	TRNA PSEUDOURIDINE SYNTHASE D	Interproscan
PTHR10127 all species →	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan
PTHR10869 all species →	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	Interproscan
PTHR10924 all species →	MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED	Interproscan
PTHR21231 all species →	XPA-BINDING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0030100 all species →	Biological Process	regulation of endocytosis	Interproscan
GO:0097320 all species →	Biological Process	plasma membrane tubulation	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0004656 all species →	Molecular Function	procollagen-proline 4-dioxygenase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0018401 all species →	Biological Process	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0015232 all species →	Molecular Function	heme transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0051184 all species →	Molecular Function	obsolete cofactor transmembrane transporter activity	Interproscan
GO:0097037 all species →	Biological Process	heme export	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06176	truD, PUS7; tRNA pseudouridine13 synthase	EC:5.4.99.27	Transfer RNA biogenesis	ko03016	deepkoala
K06711	PH-4; hypoxia-inducible factor prolyl 4-hydroxylase	EC:1.14.11.-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala
K08220	FLVCR, SLC49A1_2; MFS transporter, FLVCR family, feline leukemia virus subgroup C receptor-related protein	-	Transporters	ko02000	deepkoala
K16489	SFI1; protein SFI1	-	Chromosome and associated proteins	ko03036	deepkoala
K20123	PACSIN; protein kinase C and casein kinase substrate in neurons protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.