Gene detail

Detailed information of g12232.t1 in Acropora digitifera

Genomic Location: chr5Alt:30666399...30683072
NR annotation: XP_044176007.1, uncharacterized protein LOC114959841 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g12232.t1

ATGGAGGATAAGAAACCAAGAACATCCCTTCACTGGTTTCGTAAAAATCTGCGTCTTCATGACAACCCAGCCTTGTGTGAGGCCATTAAGGAAAGTGATGATTTTTTGGCTCTTTATATTCTTCCACCCTCTATCCCCGATGGAAACATATCAGCGAACCGATGGAATTTTCTGATTGAATGCCTGGAGGATTTGAACCGTAGTCTGGCAAGCGTTGGTTCTCGTCTGCTTGTTGTCCAAGGATACCCAGCCCAGGTGATTCCAAAGTTGCTAAAACGTCTGCATGTCACCAAGTTGACATTTGAAAGTGAAAGTGAGCCATTCAGTAAACAACGGGATGCTGTGATCACCCATCTTGCTGAGAGCATGGGAGTTGAGGTGGTTTCTTGTACTTCACACACTTTGTATGAAGTGGACAAAGTCCTGGAGGCAAACAACAATGTAACACCAATGCTATTTGACAGCTTCCTTGATGTTGTAGCTACCTTGGGTCCACCAGAACCTCCTACACAAACAGTTAGCCAGGATATGATGTCTTTGCTTTTGCACAAAGCAAACATGTTTGGGGACTGTGACATACCAGCTGTAGAGGATCTTGGCATTGACAGGGCCAAGGTTACATGTCAAGAAATTTGGTGTGGGGGTGAATCTGAGGCTTTACAAAAACTCCATGCCTTCCTTAAAGAGCTGGTTGATGTTGACTTTCAAGTGGAGTCAGCGAGTGAACTATTTCTTCATGGTTTTACAGACAAGCTGAGTCCATACCTCAGATTTGGATGCCTTTCTCCAAGGACATATTACCATGCTTTGTTGGACACCTATTACACTGTAAAAAAGCAGTATCCCCCGCAGTCACTGTTCTTCTCATTGTTGTGGAGGGATTTCTATTTTGTACTTGGTAGCAGTAATCCAACTCTAAACCAAATGGAAAATAATCCATTGTGCTTGCAAATCAACTGGGACCAGAATGTCGTTGCTTTGGAAAAATGGAAAATGGGTCAGACAGGGTTTCCATTTGTTGATGCCATCATGCGGCAGTTGTGCAAGGAGGGATGGATTTCTTCATTAGCTCGGCAAGTTGTTGGATCTTTCCTAACACAAGGGTGTATGTGGATGAGCTGGGAGGAAGGGTTCAAGATCTTTGGGGAGTTGCAGCTGGATGCCGAGTGGAGCCTCAGTGCAGGCAGTTGGTTGTCGATTTCTGGAAGTTCTTTTGATCAAAACCGACTGGCTCTTTTTTGTCCTGTAGAGACTGCCAAGAAGTTGGATCCAATGGGAGAGTACATCAGGAAATATGTGCCTGAAGTTAAAGACTTGCCATTGGAATATGTGTTTGAGCCATGGACTGCTCCTTCAGCTGTACAAGAAGCTGCTGGATGTGTTCTGGGTAGAAACTATCCATTACCTCTTGCTGATCATAAGGAACAGCAGAAAGTCTGTATGCAAAGGCTGAAAGAGCTAGCTCAGAATCTTGGCACTGATATGAGAGGGCGTGAAAGAGGACACACAAGTGTGCACTTGTTTAGGAAAGACCTAAGGCTGCATGACAACCCAAGCCTATGCAGCTGTCTTGAAGGCAGTACCACATTTTATCCAGTGTATGTATTGGATACAGAAGCAGCAAGGAAGAGCAAGATATCTCCAAATCGCTGGAACTTCTTGCTTGAGTGTCTGAGAGACTTGGATGATCAGCTGGCAGCACTTGGATCCCGTCTCTTTGTGGTGCGCGGAAGGGAAGTGGAGGTAATATCAAAACTGATTCAAGAGTGGGGAGTCACACGAATTAGCTTTGAAAGTGACAGTGAACCATTTGGTGTGCAAAGAGATGCTGTCATCCAGAAATTAGCAGAGGAAGCTGGAGTTGAAGTGTTGAGTAAAACATCGCACACACTCTTCAAGCCTGAGGATATTATACATGCAAACCATGGAGTTGCACCCATGATCTTTGAGGACTTTCTGGAAGTTCTGAAAGACAATCTACTGAAAGCCCCCAGTCCAGTGAAGCAAGTGGACAGACAGTTATTTGGTTGTTGTGTCACACCAGCTGATCACCAAGCCAACTTTGGATTGCCAGAATTAAGTGAGCTTGGAGTGAGGGATACACGATTGGTAACAAGCTCATGCCTTTGGAAAGGAGGAGAACAAGAGGCCCTTAGAAGAGTCTTGCTTTTCGAAAAACAGCTTGAGAAGAATGACTTTGAGGATGAGCCACTCAGTGCTGCAACAATGACATCATCTCCGATCCATCTGAGCCCTTACTTGCGATTTGGATGCCTGTCACCCAGATTAATGTGGCAGTGCATTAAGGACACTTATTGGAAGGCCAAGGGTAGAATGCCTCCAATGTCCTTGTTCCAGCCTCTTCTACTTCGAGAGTTCTTCTTCACTATTGCTCATACCAATCCAGGTTTGGGTAAAATGGACGGCAACCCTTTAAGCATTCAGTTTCCATGGGAGGAAAACCCAGAAGGGCTTCAGAGGTGGAAGAAGGGTACCACAGGGTTCCCATGGATTGATGCAGTTATGCGACAGTTATGTCAAGAGGGGTGGATTCCCCATCTTGCTCGTCAAGCTGTGGGCTGTTTCTTGACAAGAGGCTGCCTTTGGATCAACTGGGAAGAAGGATACAAGGTGTTTGATGAACTGCAGTTGGACGCAGAATGGAGTCTCAATGTTGGCAATTGGCTGTGGCTTTCTGGGAGTGCTTTTGTAAAAGGTCCTGTGCCTTGGTTCTGCCCAGTGGAAGTTGGAAAGAAGATAGATCCAACTGGAGGATATGTCAAGAAATATGTGCCAGAGGTTAAACATTTACCAGTCAAATACCTGTTTGAACCCTGGAAAGCTCCCCTGAAAGTTCAAAAGGCTGCACGATGCATTGTTGGAGAAGATTACCCTGACCCTGTTGCAGATCATATCAAACAGCGAATTATCTGTGTTCAGCGCCTAAAGGATCTCTGTTTCTCGTTGGATATTCTAGGACACACAAGCCTACACTGGTTCAGAAAAGACCTGCGCCTTCATGATAACCCCAGCCTACGTGAATGCCTCAGAAACAGCAAGGTCTTCTACGGAGTATATTTCTTACCACCCAGCGAAGCAAAACAAGGCTCTGTGAGTTTGAACCGTTGGGGATTCTTGTTAGAGTCTCTGCGAGACCTTGATACCAGCCTTGTTGAATGCGGTTCACGCCTGTTTGTAATCAGAGGCAACCCCGTTGAGATGTTGCCCAACCTGTTTAAGAAGTGGAACATAAATCAAATGTCATTCGAAGTGGATAGCGAACCTTACAGCAACAGCAGAGATCTGGTGATCAGTCATCTTGCCAAAGAAAACGGAATCGAAGTTATCAGCCGCGTATCACACACACTGTATGATCCACGAATATTACGCGGTTTGAGCTCTGGAATTGTGCCACTTTTGTTCGACGAGTTCAAAGAGTTCGTATTGCAGAAACGACAACCCGAGAAGCCTGTACCGAAAGTGGGTCGAAAACTGTTTGGCGCATGCGTAACTCCGGTGGGCAGCGATCACCAGCAATGTTATGGAGTGCCCAGATTGGCTGAAATCGGCGGGAAATTTTCCAAGTCCGGTTCCGTTTGTTCTGAATTATACAAAGGTGGAGAGAGCGAGGCTTTGAAGAGAATGGAGACAGCCTTACAATGGATGGTAAAGAATGATTTCACTGAGCCAGAGATCACTGTTCACTCGCTGCTTCCATCTGCAACTCACTTGAGTCCGTATTTGAGATGTGGCTGTTTGTCATCTCGGTTGTTGCACCAGCGAATAACTGAAGAATACATCAAGGCAAAAGGCGTGAGTCCTCCTTCCGAACTGTTTGACAAGCTGCTGTGGCGTGAGTTTTTCTTTGTCGTTGGAGGTCAGATTCCAGATGCTCACGAGATGATCAACAATCCTATTAGTCTTGAGATTCCTTGGGAAGATTCTGTTGAATACCTTGAACGATGGAAAAAGGGAACGACCGGATTTCCATGGATTGATGCAATCATGCGACAGCTGCGCACTGAAGGTTGGATTCATAATATTGCACGCAGGGCTGTGGCCTCGTTTCTCACCCGCGGTTGTTTGTGGGTCAATTGGGAAGAAGGATTCAAGGTCTTTGACGAGTTTCAGTTGGATGCAGAGAGAAGCTTGAATGTGGGCAATTGGCTTTGGGTGTCAACAAGTACTTTCGTGAAAGGACCGGTGCCTTGGTTTTGCCCGGTGGGAGTTGGAAAAAAGATCGATCCGACTGGGGAATATGTTAGGAAATACGTCCCAGAAATAAGAAACCTTCCCACAGAATACATCTTTGAACCTTGGCTGACACCACGTGATCTTCAGCGGTCGTACGGCTGTGTGATTGGTCGAGATTATCCCGCCCCAATCGTCAACCACGTGAAACAACGTGCCATTTGCGTACAGCGCATGCAGGAATTGGCATTTAAGCTTGCCTCTAAGTGA

Transcript

chr5Alt.g12232.t1

GTTGAGATCCTTATATAATAAGGCAAATTGTTTTTAGTCACAAGCACTGCATGCTTCCTAGTCAGTTAGTCAGAATTATAATGGAGGATAAGAAACCAAGAACATCCCTTCACTGGTTTCGTAAAAATCTGCGTCTTCATGACAACCCAGCCTTGTGTGAGGCCATTAAGGAAAGTGATGATTTTTTGGCTCTTTATATTCTTCCACCCTCTATCCCCGATGGAAACATATCAGCGAACCGATGGAATTTTCTGATTGAATGCCTGGAGGATTTGAACCGTAGTCTGGCAAGCGTTGGTTCTCGTCTGCTTGTTGTCCAAGGATACCCAGCCCAGGTGATTCCAAAGTTGCTAAAACGTCTGCATGTCACCAAGTTGACATTTGAAAGTGAAAGTGAGCCATTCAGTAAACAACGGGATGCTGTGATCACCCATCTTGCTGAGAGCATGGGAGTTGAGGTGGTTTCTTGTACTTCACACACTTTGTATGAAGTGGACAAAGTCCTGGAGGCAAACAACAATGTAACACCAATGCTATTTGACAGCTTCCTTGATGTTGTAGCTACCTTGGGTCCACCAGAACCTCCTACACAAACAGTTAGCCAGGATATGATGTCTTTGCTTTTGCACAAAGCAAACATGTTTGGGGACTGTGACATACCAGCTGTAGAGGATCTTGGCATTGACAGGGCCAAGGTTACATGTCAAGAAATTTGGTGTGGGGGTGAATCTGAGGCTTTACAAAAACTCCATGCCTTCCTTAAAGAGCTGGTTGATGTTGACTTTCAAGTGGAGTCAGCGAGTGAACTATTTCTTCATGGTTTTACAGACAAGCTGAGTCCATACCTCAGATTTGGATGCCTTTCTCCAAGGACATATTACCATGCTTTGTTGGACACCTATTACACTGTAAAAAAGCAGTATCCCCCGCAGTCACTGTTCTTCTCATTGTTGTGGAGGGATTTCTATTTTGTACTTGGTAGCAGTAATCCAACTCTAAACCAAATGGAAAATAATCCATTGTGCTTGCAAATCAACTGGGACCAGAATGTCGTTGCTTTGGAAAAATGGAAAATGGGTCAGACAGGGTTTCCATTTGTTGATGCCATCATGCGGCAGTTGTGCAAGGAGGGATGGATTTCTTCATTAGCTCGGCAAGTTGTTGGATCTTTCCTAACACAAGGGTGTATGTGGATGAGCTGGGAGGAAGGGTTCAAGATCTTTGGGGAGTTGCAGCTGGATGCCGAGTGGAGCCTCAGTGCAGGCAGTTGGTTGTCGATTTCTGGAAGTTCTTTTGATCAAAACCGACTGGCTCTTTTTTGTCCTGTAGAGACTGCCAAGAAGTTGGATCCAATGGGAGAGTACATCAGGAAATATGTGCCTGAAGTTAAAGACTTGCCATTGGAATATGTGTTTGAGCCATGGACTGCTCCTTCAGCTGTACAAGAAGCTGCTGGATGTGTTCTGGGTAGAAACTATCCATTACCTCTTGCTGATCATAAGGAACAGCAGAAAGTCTGTATGCAAAGGCTGAAAGAGCTAGCTCAGAATCTTGGCACTGATATGAGAGGGCGTGAAAGAGGACACACAAGTGTGCACTTGTTTAGGAAAGACCTAAGGCTGCATGACAACCCAAGCCTATGCAGCTGTCTTGAAGGCAGTACCACATTTTATCCAGTGTATGTATTGGATACAGAAGCAGCAAGGAAGAGCAAGATATCTCCAAATCGCTGGAACTTCTTGCTTGAGTGTCTGAGAGACTTGGATGATCAGCTGGCAGCACTTGGATCCCGTCTCTTTGTGGTGCGCGGAAGGGAAGTGGAGGTAATATCAAAACTGATTCAAGAGTGGGGAGTCACACGAATTAGCTTTGAAAGTGACAGTGAACCATTTGGTGTGCAAAGAGATGCTGTCATCCAGAAATTAGCAGAGGAAGCTGGAGTTGAAGTGTTGAGTAAAACATCGCACACACTCTTCAAGCCTGAGGATATTATACATGCAAACCATGGAGTTGCACCCATGATCTTTGAGGACTTTCTGGAAGTTCTGAAAGACAATCTACTGAAAGCCCCCAGTCCAGTGAAGCAAGTGGACAGACAGTTATTTGGTTGTTGTGTCACACCAGCTGATCACCAAGCCAACTTTGGATTGCCAGAATTAAGTGAGCTTGGAGTGAGGGATACACGATTGGTAACAAGCTCATGCCTTTGGAAAGGAGGAGAACAAGAGGCCCTTAGAAGAGTCTTGCTTTTCGAAAAACAGCTTGAGAAGAATGACTTTGAGGATGAGCCACTCAGTGCTGCAACAATGACATCATCTCCGATCCATCTGAGCCCTTACTTGCGATTTGGATGCCTGTCACCCAGATTAATGTGGCAGTGCATTAAGGACACTTATTGGAAGGCCAAGGGTAGAATGCCTCCAATGTCCTTGTTCCAGCCTCTTCTACTTCGAGAGTTCTTCTTCACTATTGCTCATACCAATCCAGGTTTGGGTAAAATGGACGGCAACCCTTTAAGCATTCAGTTTCCATGGGAGGAAAACCCAGAAGGGCTTCAGAGGTGGAAGAAGGGTACCACAGGGTTCCCATGGATTGATGCAGTTATGCGACAGTTATGTCAAGAGGGGTGGATTCCCCATCTTGCTCGTCAAGCTGTGGGCTGTTTCTTGACAAGAGGCTGCCTTTGGATCAACTGGGAAGAAGGATACAAGGTGTTTGATGAACTGCAGTTGGACGCAGAATGGAGTCTCAATGTTGGCAATTGGCTGTGGCTTTCTGGGAGTGCTTTTGTAAAAGGTCCTGTGCCTTGGTTCTGCCCAGTGGAAGTTGGAAAGAAGATAGATCCAACTGGAGGATATGTCAAGAAATATGTGCCAGAGGTTAAACATTTACCAGTCAAATACCTGTTTGAACCCTGGAAAGCTCCCCTGAAAGTTCAAAAGGCTGCACGATGCATTGTTGGAGAAGATTACCCTGACCCTGTTGCAGATCATATCAAACAGCGAATTATCTGTGTTCAGCGCCTAAAGGATCTCTGTTTCTCGTTGGATATTCTAGGACACACAAGCCTACACTGGTTCAGAAAAGACCTGCGCCTTCATGATAACCCCAGCCTACGTGAATGCCTCAGAAACAGCAAGGTCTTCTACGGAGTATATTTCTTACCACCCAGCGAAGCAAAACAAGGCTCTGTGAGTTTGAACCGTTGGGGATTCTTGTTAGAGTCTCTGCGAGACCTTGATACCAGCCTTGTTGAATGCGGTTCACGCCTGTTTGTAATCAGAGGCAACCCCGTTGAGATGTTGCCCAACCTGTTTAAGAAGTGGAACATAAATCAAATGTCATTCGAAGTGGATAGCGAACCTTACAGCAACAGCAGAGATCTGGTGATCAGTCATCTTGCCAAAGAAAACGGAATCGAAGTTATCAGCCGCGTATCACACACACTGTATGATCCACGAATATTACGCGGTTTGAGCTCTGGAATTGTGCCACTTTTGTTCGACGAGTTCAAAGAGTTCGTATTGCAGAAACGACAACCCGAGAAGCCTGTACCGAAAGTGGGTCGAAAACTGTTTGGCGCATGCGTAACTCCGGTGGGCAGCGATCACCAGCAATGTTATGGAGTGCCCAGATTGGCTGAAATCGGCGGGAAATTTTCCAAGTCCGGTTCCGTTTGTTCTGAATTATACAAAGGTGGAGAGAGCGAGGCTTTGAAGAGAATGGAGACAGCCTTACAATGGATGGTAAAGAATGATTTCACTGAGCCAGAGATCACTGTTCACTCGCTGCTTCCATCTGCAACTCACTTGAGTCCGTATTTGAGATGTGGCTGTTTGTCATCTCGGTTGTTGCACCAGCGAATAACTGAAGAATACATCAAGGCAAAAGGCGTGAGTCCTCCTTCCGAACTGTTTGACAAGCTGCTGTGGCGTGAGTTTTTCTTTGTCGTTGGAGGTCAGATTCCAGATGCTCACGAGATGATCAACAATCCTATTAGTCTTGAGATTCCTTGGGAAGATTCTGTTGAATACCTTGAACGATGGAAAAAGGGAACGACCGGATTTCCATGGATTGATGCAATCATGCGACAGCTGCGCACTGAAGGTTGGATTCATAATATTGCACGCAGGGCTGTGGCCTCGTTTCTCACCCGCGGTTGTTTGTGGGTCAATTGGGAAGAAGGATTCAAGGTCTTTGACGAGTTTCAGTTGGATGCAGAGAGAAGCTTGAATGTGGGCAATTGGCTTTGGGTGTCAACAAGTACTTTCGTGAAAGGACCGGTGCCTTGGTTTTGCCCGGTGGGAGTTGGAAAAAAGATCGATCCGACTGGGGAATATGTTAGGAAATACGTCCCAGAAATAAGAAACCTTCCCACAGAATACATCTTTGAACCTTGGCTGACACCACGTGATCTTCAGCGGTCGTACGGCTGTGTGATTGGTCGAGATTATCCCGCCCCAATCGTCAACCACGTGAAACAACGTGCCATTTGCGTACAGCGCATGCAGGAATTGGCATTTAAGCTTGCCTCTAAGTGATGTTGGCGCCACGTGCTGAATGTGATTTGATTGATACCGAGCAGAGAAATTTTTATTCATTCCTTGATATTTTTTGTTTCTTATAAAATCATAGAAATGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32Q86	Cryptochrome-1 OS=Rattus norvegicus OX=10116 GN=Cry1 PE=1 SV=1
P97784	Cryptochrome-1 OS=Mus musculus OX=10090 GN=Cry1 PE=1 SV=1
Q16526	Cryptochrome-1 OS=Homo sapiens OX=9606 GN=CRY1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00875 all species →	DNA_photolyase	DNA photolyase	Domain	Interproscan
PF03441 all species →	FAD_binding_7	FAD binding domain of DNA photolyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002081 all species →	Family	Cryptochrome/DNA photolyase class 1	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR006050 all species →	Domain	DNA photolyase, N-terminal	Interproscan
IPR005101 all species →	Domain	Cryptochrome/DNA photolyase, FAD-binding domain	Interproscan
IPR036134 all species →	Homologous_superfamily	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Interproscan
IPR036155 all species →	Homologous_superfamily	Cryptochrome/photolyase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11455 all species →	CRYPTOCHROME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:0043153 all species →	Biological Process	entrainment of circadian clock by photoperiod	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g12232.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g12232.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

379.5Max TPM

160.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	160.66	379.46

Per sample · hover a bar for the full sample record

Show the sample table (39 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	379.46
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	321.74
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	319.48
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	317.63
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	301.78
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	295.40
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	277.59
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	263.10
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	248.73
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	247.73
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	225.07
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	218.10
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	207.26
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	205.60
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	198.79
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	195.60
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	181.52
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	161.22
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	151.51
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	145.55
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	140.55
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	129.71
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	127.68
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	126.87
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	98.88
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	82.63
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	78.58
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	74.01
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	73.55
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	64.64
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	58.40
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	56.21
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	55.58
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	46.88
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	41.67
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	40.82
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	40.30
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	35.32
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	30.77

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora digitifera tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	8	g7402.t1	0.829797996763176
Negatively correlated	26	g30980.t1	-0.70110975085818

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora digitifera, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

Peak calls overlapping this gene

Assay	Sample	Peaks	Region

No called peak overlaps this gene in 1 available assay. Either the gene is not near an accessible or marked region in those samples, or it is not represented in the peak caller’s annotation.

Browse the full epigenomic landscape of this species: DNase-seq (DHS).

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →