Gene detail

Detailed information of g1225.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047138233.1, dnaJ homolog subfamily C member 13 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75165	DnaJ homolog subfamily C member 13 OS=Homo sapiens OX=9606 GN=DNAJC13 PE=1 SV=5
F4IVL6	DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana OX=3702 GN=GRV2 PE=1 SV=1
Q5F5M1	Chaperone protein DnaJ OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=dnaJ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000016 (this species only)
Orthogroup (gene family)	OG0000230 (this species only)
Orthogroup (gene family)	OG0000431 (this species only)
Orthogroup (gene family)	OG0001445 (this species only)
Orthogroup (gene family)	OG0002268 (this species only)
Orthogroup (gene family)	OG0004300 (this species only)
Orthogroup (gene family)	OG0006456 (this species only)
Orthogroup (gene family)	OG0006913 (this species only)
Orthogroup (gene family)	OG0007329 (this species only)
Orthogroup (gene family)	OG0009593 (this species only)
Orthogroup (gene family)	OG0014801 (this species only)
Orthogroup (gene family)	OG0171699 (this species only)
Orthogroup (gene family)	OG0173221 (this species only)
Orthogroup (gene family)	OG0174419 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF02833 all species →	DHHA2	DHHA2 domain	Family	Interproscan
PF13716 all species →	CRAL_TRIO_2	Divergent CRAL/TRIO domain	Domain	Interproscan
PF00022 all species →	Actin	Actin	Family	Interproscan
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan
PF02209 all species →	VHP	Villin headpiece domain	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF19432 all species →	RME-8_N	DNAJ protein RME-8 N-terminal	Domain	Interproscan
PF14237 all species →	GYF_2	GYF domain 2	Domain	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF03948 all species →	Ribosomal_L9_C	Ribosomal protein L9, C-terminal domain	Domain	Interproscan
PF01281 all species →	Ribosomal_L9_N	Ribosomal protein L9, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050283 all species →	Family	E-box Binding Transcriptional Regulators	Interproscan
IPR038222 all species →	Homologous_superfamily	DHHA2 domain superfamily	Interproscan
IPR004097 all species →	Domain	DHHA2 domain	Interproscan
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR038763 all species →	Homologous_superfamily	DHH phosphoesterase superfamily	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR004000 all species →	Family	Actin family	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR007122 all species →	Family	Villin/Gelsolin	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan
IPR036886 all species →	Homologous_superfamily	Villin headpiece domain superfamily	Interproscan
IPR003128 all species →	Domain	Villin headpiece	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR044978 all species →	Family	DnaJ homologue subfamily C, GRV2/DNAJC13	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR045802 all species →	Domain	DnaJ homologue subfamily C, GRV2/DNAJC13, N-terminal domain	Interproscan
IPR025640 all species →	Domain	GYF domain 2	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR006028 all species →	Family	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR036791 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, C-terminal domain superfamily	Interproscan
IPR036935 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Interproscan
IPR000244 all species →	Family	Large ribosomal subunit protein bL9	Interproscan
IPR020069 all species →	Domain	Large ribosomal subunit protein bL9, C-terminal	Interproscan
IPR020070 all species →	Domain	Large ribosomal subunit protein bL9, N-terminal	Interproscan
IPR009027 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23349 all species →	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST	Interproscan
PTHR12112 all species →	BNIP - RELATED	Interproscan
PTHR39299 all species →	-	Interproscan
PTHR11977 all species →	VILLIN	Interproscan
PTHR36983 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 13	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR18945 all species →	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan
PTHR21368 all species →	50S RIBOSOMAL PROTEIN L9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032502 all species →	Biological Process	developmental process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016462 all species →	Molecular Function	pyrophosphatase activity	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0008154 all species →	Biological Process	actin polymerization or depolymerization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0051014 all species →	Biological Process	actin filament severing	Interproscan
GO:0051016 all species →	Biological Process	barbed-end actin filament capping	Interproscan
GO:0006898 all species →	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:2000641 all species →	Biological Process	regulation of early endosome to late endosome transport	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0030594 all species →	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050877 all species →	Biological Process	nervous system process	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02939	RP-L9, MRPL9, rplI; large subunit ribosomal protein L9	-	Ribosome	ko03011	deepkoala
K08017	AVIL; advillin	-	Cytoskeleton proteins	ko04812	deepkoala
K09533	DNAJC13; DnaJ homolog subfamily C member 13	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.