Gene detail

Detailed information of g1226.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: RXN24393.1, vam6 Vps39 [Labeo rohita]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R5L3	Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1
Q96JC1	Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2
Q9VEA2	Vacuolar protein sorting-associated protein 39 homolog OS=Drosophila melanogaster OX=7227 GN=Vps39 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000047 (this species only)
Orthogroup (gene family)	OG0000715 (this species only)
Orthogroup (gene family)	OG0001524 (this species only)
Orthogroup (gene family)	OG0002213 (this species only)
Orthogroup (gene family)	OG0003402 (this species only)
Orthogroup (gene family)	OG0004223 (this species only)
Orthogroup (gene family)	OG0004426 (this species only)
Orthogroup (gene family)	OG0005043 (this species only)
Orthogroup (gene family)	OG0029680 (this species only)
Orthogroup (gene family)	OG0080472 (this species only)
Orthogroup (gene family)	OG0171180 (this species only)
Orthogroup (gene family)	OG0172381 (this species only)
Orthogroup (gene family)	OG0173920 (this species only)
Orthogroup (gene family)	OG0174230 (this species only)
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF05761 all species →	5_nucleotid	5' nucleotidase family	Family	Interproscan
PF10367 all species →	Vps39_2	Vacuolar sorting protein 39 domain 2	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00433 all species →	Pkinase_C	Protein kinase C terminal domain	Family	Interproscan
PF00210 all species →	Ferritin	Ferritin-like domain	Domain	Interproscan
PF01504 all species →	PIP5K	Phosphatidylinositol-4-phosphate 5-Kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR008380 all species →	Family	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR032914 all species →	Family	Vam6/VPS39/TRAP1 family	Interproscan
IPR019453 all species →	Domain	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR009040 all species →	Domain	Ferritin-like diiron domain	Interproscan
IPR012347 all species →	Homologous_superfamily	Ferritin-like	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR017892 all species →	Domain	Protein kinase, C-terminal	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR008331 all species →	Domain	Ferritin/DPS protein domain	Interproscan
IPR002498 all species →	Domain	Phosphatidylinositol-4-phosphate 4/5-kinase, core	Interproscan
IPR027483 all species →	Homologous_superfamily	Phosphatidylinositol-4-phosphate 4/5-kinase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38681 all species →	RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED	Interproscan
PTHR46116 all species →	(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME	Interproscan
PTHR45632 all species →	LD33804P	Interproscan
PTHR12103 all species →	5'-NUCLEOTIDASE DOMAIN-CONTAINING	Interproscan
PTHR12894 all species →	CNH DOMAIN CONTAINING	Interproscan
PTHR24351 all species →	RIBOSOMAL PROTEIN S6 KINASE	Interproscan
PTHR45748 all species →	1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008253 all species →	Molecular Function	5'-nucleotidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0034058 all species →	Biological Process	endosomal vesicle fusion	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0008199 all species →	Molecular Function	ferric iron binding	Interproscan
GO:0046488 all species →	Biological Process	phosphatidylinositol metabolic process	Interproscan
GO:0052742 all species →	Molecular Function	phosphatidylinositol kinase activity	Interproscan
GO:0000285 all species →	Molecular Function	1-phosphatidylinositol-3-phosphate 5-kinase activity	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20183	VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.