Detailed information of g1226.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: RXN24393.1, vam6 Vps39 [Labeo rohita]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8R5L3Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1
Q96JC1Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2
Q9VEA2Vacuolar protein sorting-associated protein 39 homolog OS=Drosophila melanogaster OX=7227 GN=Vps39 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE2|UBC|UBC

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00179UQ_conUbiquitin-conjugating enzymeDomainInterproscan
PF01344Kelch_1Kelch motifRepeatInterproscan
PF07707BACKBTB And C-terminal KelchDomainInterproscan
PF057615_nucleotid5' nucleotidase familyFamilyInterproscan
PF10367Vps39_2Vacuolar sorting protein 39 domain 2DomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF00433Pkinase_CProtein kinase C terminal domainFamilyInterproscan
PF00210FerritinFerritin-like domainDomainInterproscan
PF01504PIP5KPhosphatidylinositol-4-phosphate 5-KinaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000608DomainUbiquitin-conjugating enzyme E2Interproscan
IPR016135Homologous_superfamilyUbiquitin-conjugating enzyme/RWD-likeInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR011705DomainBTB/Kelch-associatedInterproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR008380FamilyHAD-superfamily hydrolase, subfamily IG, 5'-nucleotidaseInterproscan
IPR036412Homologous_superfamilyHAD-like superfamilyInterproscan
IPR023214Homologous_superfamilyHAD superfamilyInterproscan
IPR032914FamilyVam6/VPS39/TRAP1 familyInterproscan
IPR019453DomainVacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2Interproscan
IPR000719DomainProtein kinase domainInterproscan
IPR009040DomainFerritin-like diiron domainInterproscan
IPR012347Homologous_superfamilyFerritin-likeInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR009078Homologous_superfamilyFerritin-like superfamilyInterproscan
IPR017892DomainProtein kinase, C-terminalInterproscan
IPR000961DomainAGC-kinase, C-terminalInterproscan
IPR008331DomainFerritin/DPS protein domainInterproscan
IPR002498DomainPhosphatidylinositol-4-phosphate 4/5-kinase, coreInterproscan
IPR027483Homologous_superfamilyPhosphatidylinositol-4-phosphate 4/5-kinase, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan
PTHR46116(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYMEInterproscan
PTHR45632LD33804PInterproscan
PTHR121035'-NUCLEOTIDASE DOMAIN-CONTAININGInterproscan
PTHR12894CNH DOMAIN CONTAININGInterproscan
PTHR24351RIBOSOMAL PROTEIN S6 KINASEInterproscan
PTHR457481-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008253Molecular Function5'-nucleotidase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006914Biological ProcessautophagyInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0034058Biological Processendosomal vesicle fusionInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0018105Biological Processpeptidyl-serine phosphorylationInterproscan
GO:0008199Molecular Functionferric iron bindingInterproscan
GO:0046488Biological Processphosphatidylinositol metabolic processInterproscan
GO:0052742Molecular Functionphosphatidylinositol kinase activityInterproscan
GO:0000285Molecular Function1-phosphatidylinositol-3-phosphate 5-kinase activityInterproscan
GO:0010008Cellular Componentendosome membraneInterproscan
GO:0046854Biological Processphosphatidylinositol phosphate biosynthetic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20183VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39-Membrane traffickingko04131deepkoala

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