Gene detail

Detailed information of g12263.t2 in Acropora digitifera

Genomic Location: chr5Alt:31020690...31031095
NR annotation: XP_029182881.2, gem-associated protein 5-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g12263.t2

ATGGCTCTCTCATATCTTACAGAAAGTGAACTTGCTGTTGGGTACAAGAGTGGCCTGATTGTTGTCCTTAACATTTCAAGTGATGGCGCCTTGTCAATTGTAAACAAGCTGCAAGGACATTCTAGTGAAATCCACTGTTTGGCTTGGTGTCCCACACCGAAACAACACATTGATTTTGGCCCACTGCAGGACAAAGCGACAGGTGCCAATGGACACTTGGTTGTGTCTGGGAGTAGAGATCAGACAATAAGGTTATGGGACACTTCTCAAGGTAGGGTATTGTCAATCAAACATTTGCCAAAGAGATCAACGCAGAAATGGAAAGACAAGTATGATCCTCACTGGACCAAGGACAGACTGTGGCTGAGCTTGTGTTGGCCAATGGCATCAGCAGGGCATCTCATCACAAGTAGTCAAGGAGGAGAACTGTTACTCTGGGATTTGAGCAAGGAAGGCAAAGAGCAGTACCAGACATTTGGTGTAGGCCACTCCAGAATTGTGTTTAATATTAGCTGTGATGATGCTGGGACAAGGTTAATGACTGTGTCCATGGACAGACAGATTGTCATTTGGGATCCAGCAAATTTGCAAAGCCTGCACACTCTCTCCACCCTGGGAGGATTTGCCTACTCACTGTCTATCTCCACCTTGGATCCTGGCACTCTGGGGATAGGGGTTGGGGATAGCATGCTGCGTGTGTGGCAAACAGCTTCCTCTCAAAATCCTTATGAAACTTTGACTCTTTGGCAAGGAATCAAATCCAAAGTAATGGTGGTCAAATGGCATCCCAGTAAAGAGGGCCTCCTTGCTTTTGGGGCGGATGATGGACAAGTTGGAGTGTACAATACCATCTCTAAGAGGGCAGACATTTCTGCAACATATCACAAGAAAACAGTTTATTCTTTATCTTGGGGTCCTCCATGCCCTCAAACAGATAAAGATTCCATGATCTCACACAACCTTTACAGCTGTGCTGGTGATGGGCGTGTCTATCAACACAGGACTGGGCATTTCATGGATGATCCAATCGATGTGGATGCTTTGATTCTCAAGTCTAACGACATCAAGCACAAGCCATATGGCCGAACAGATGTGTCTTGGAATTTGGATGGTACTGTCATGGCATTGGGTAACGAAGATGGGTCTATTGAGGTGTTTGTTCCGCCAGACTTGAAGCAGATTGGACTACTAATGACACACAAGAAAAGCATCACCACATTGGTGTGGCATCATGGCTTCAGTGACATCACTACTGCAGACGTTGTTAGCTGTAAGCACTGGCTGGCTTCAGGATCCAATGAATCCGTTATTCATGTCCATGACCTTAACAGCATCTTAGGTGACTTCTCGAATCCCAGACCCCGCGCAGCCCCTATCACCGAGTGTTTCCGTCAGTTGTCGGGGCATTCTGGTCGAGTTACTGGCCTGAGCTGGAGTCCTCATCAATCTGAGCTGTTGCTTTCATCATCTTACGATGGAACTGCTCAGGTGTGGGATGTTCCTAAAGGAGAGCCGCTGTACAATTTTCGCGGACACAGTAGCCGTGTTATGTGTGTAGTGTGGAGTTATCTTGATCCTGACTTGGTTTACAGTGGCGGTGAGGATGGAACGGTGCGTCCATGGAGACCATCTATGCAGGAGCATTCACAGCCGCCGGTTCAAGAAAAGAAAACGGCGCACTCTACTAGTAAGTCATCCAAGAATAAAAAGGCGAAGCAAAAAGCCAAACAAAGGGCACAGTCCATTGACAAGGAGTCATGGCGACAGGAAAAAGAACCCAAGCAAGACAACGGTCTACTTGATAATACACAGACAACGAAGACGACAAATGAAAAACCAATGGTAGAGGCGACAACTGCGCCTCAGGAAAATACGGTCCATGCAACAGTAACAGGAGAGAATGAGGTGATCGAAGCTGAATGTGCGCTGCCGGGCGTTGGAGCGTCAACAGAAACCTTACAGGTTGATATAAAGCCTAGAAGCGCTGATACAAAAAGTAAACAAGAAGTTGGAGAGGTGGAGATGCCGACGGAAAAAGCTGACGGAGGTGATTCAGTGAAGAATGAAGGGGCGAGCGTTGGCGATGGCATGGAGAAGGAGAAAAGGGTTGTTGAATCAGTTATTCCACTACGTTCTAGAGTGTCGCTGGAGCCATCTTCCTCTGTCAAAAAGAAGAAGAAAGTCAAGTCCATGTTTCCAGTTTCTGCGGTTGCCGATAACAAATCCAAAGCTGCCTCTCAAGATGAATGCTTGCTTCTAGCAAAGATTCTTTACGACCAGACGGACAGCAGTGGTTCCCTAACTGCCCCTTTGCATACAGAGGCAGGTTCAGACGGACTAACTAACCTTGGTTTGTTCGCTGATCGGCGCGCAGCTTACCGGATGATAGCTACGGAAGGTCAGCACCATGAAGAGAGTGGTAACCTTGACTACCGCCTTCAATTAGAAATCTGGAAAGGAAACTTAGCTGGTGCTCTGGAAATGGCGACCGCCAGTAAACAATTGACTGACTGGCTTGTTGCTCTCAGTCCACTTGAATCAGCAGTTTCAAATTCCAATTCGATGAAGATACAGTGGACAAGAAGAGCTATTATACGGTTGTCAAGCGCTTAA

Transcript

chr5Alt.g12263.t2

AGTATTTTTTTTCTTTTGTTTTAGCTTAGTCACTGGTTCAGTTAAGGGGGGAAAAGTCACATGTCTCTCCTGGTCTCCTTTGGTGCGAGATTTGGTTGTCTCTGGTGATGAAAAAGGACAAGTTATTGTATGGAGATATGAGAAAGGATGTGTTTATGGTGGTTGCCCTGTGCAAGATCACATTTTTTCAATGGCTCTCTCATATCTTACAGAAAGTGAACTTGCTGTTGGGTACAAGAGTGGCCTGATTGTTGTCCTTAACATTTCAAGTGATGGCGCCTTGTCAATTGTAAACAAGCTGCAAGGACATTCTAGTGAAATCCACTGTTTGGCTTGGTGTCCCACACCGAAACAACACATTGATTTTGGCCCACTGCAGGACAAAGCGACAGGTGCCAATGGACACTTGGTTGTGTCTGGGAGTAGAGATCAGACAATAAGGTTATGGGACACTTCTCAAGGTAGGGTATTGTCAATCAAACATTTGCCAAAGAGATCAACGCAGAAATGGAAAGACAAGTATGATCCTCACTGGACCAAGGACAGACTGTGGCTGAGCTTGTGTTGGCCAATGGCATCAGCAGGGCATCTCATCACAAGTAGTCAAGGAGGAGAACTGTTACTCTGGGATTTGAGCAAGGAAGGCAAAGAGCAGTACCAGACATTTGGTGTAGGCCACTCCAGAATTGTGTTTAATATTAGCTGTGATGATGCTGGGACAAGGTTAATGACTGTGTCCATGGACAGACAGATTGTCATTTGGGATCCAGCAAATTTGCAAAGCCTGCACACTCTCTCCACCCTGGGAGGATTTGCCTACTCACTGTCTATCTCCACCTTGGATCCTGGCACTCTGGGGATAGGGGTTGGGGATAGCATGCTGCGTGTGTGGCAAACAGCTTCCTCTCAAAATCCTTATGAAACTTTGACTCTTTGGCAAGGAATCAAATCCAAAGTAATGGTGGTCAAATGGCATCCCAGTAAAGAGGGCCTCCTTGCTTTTGGGGCGGATGATGGACAAGTTGGAGTGTACAATACCATCTCTAAGAGGGCAGACATTTCTGCAACATATCACAAGAAAACAGTTTATTCTTTATCTTGGGGTCCTCCATGCCCTCAAACAGATAAAGATTCCATGATCTCACACAACCTTTACAGCTGTGCTGGTGATGGGCGTGTCTATCAACACAGGACTGGGCATTTCATGGATGATCCAATCGATGTGGATGCTTTGATTCTCAAGTCTAACGACATCAAGCACAAGCCATATGGCCGAACAGATGTGTCTTGGAATTTGGATGGTACTGTCATGGCATTGGGTAACGAAGATGGGTCTATTGAGGTGTTTGTTCCGCCAGACTTGAAGCAGATTGGACTACTAATGACACACAAGAAAAGCATCACCACATTGGTGTGGCATCATGGCTTCAGTGACATCACTACTGCAGACGTTGTTAGCTGTAAGCACTGGCTGGCTTCAGGATCCAATGAATCCGTTATTCATGTCCATGACCTTAACAGCATCTTAGGTGACTTCTCGAATCCCAGACCCCGCGCAGCCCCTATCACCGAGTGTTTCCGTCAGTTGTCGGGGCATTCTGGTCGAGTTACTGGCCTGAGCTGGAGTCCTCATCAATCTGAGCTGTTGCTTTCATCATCTTACGATGGAACTGCTCAGGTGTGGGATGTTCCTAAAGGAGAGCCGCTGTACAATTTTCGCGGACACAGTAGCCGTGTTATGTGTGTAGTGTGGAGTTATCTTGATCCTGACTTGGTTTACAGTGGCGGTGAGGATGGAACGGTGCGTCCATGGAGACCATCTATGCAGGAGCATTCACAGCCGCCGGTTCAAGAAAAGAAAACGGCGCACTCTACTAGTAAGTCATCCAAGAATAAAAAGGCGAAGCAAAAAGCCAAACAAAGGGCACAGTCCATTGACAAGGAGTCATGGCGACAGGAAAAAGAACCCAAGCAAGACAACGGTCTACTTGATAATACACAGACAACGAAGACGACAAATGAAAAACCAATGGTAGAGGCGACAACTGCGCCTCAGGAAAATACGGTCCATGCAACAGTAACAGGAGAGAATGAGGTGATCGAAGCTGAATGTGCGCTGCCGGGCGTTGGAGCGTCAACAGAAACCTTACAGGTTGATATAAAGCCTAGAAGCGCTGATACAAAAAGTAAACAAGAAGTTGGAGAGGTGGAGATGCCGACGGAAAAAGCTGACGGAGGTGATTCAGTGAAGAATGAAGGGGCGAGCGTTGGCGATGGCATGGAGAAGGAGAAAAGGGTTGTTGAATCAGTTATTCCACTACGTTCTAGAGTGTCGCTGGAGCCATCTTCCTCTGTCAAAAAGAAGAAGAAAGTCAAGTCCATGTTTCCAGTTTCTGCGGTTGCCGATAACAAATCCAAAGCTGCCTCTCAAGATGAATGCTTGCTTCTAGCAAAGATTCTTTACGACCAGACGGACAGCAGTGGTTCCCTAACTGCCCCTTTGCATACAGAGGCAGGTTCAGACGGACTAACTAACCTTGGTTTGTTCGCTGATCGGCGCGCAGCTTACCGGATGATAGCTACGGAAGGTCAGCACCATGAAGAGAGTGGTAACCTTGACTACCGCCTTCAATTAGAAATCTGGAAAGGAAACTTAGCTGGTGCTCTGGAAATGGCGACCGCCAGTAAACAATTGACTGACTGGCTTGTTGCTCTCAGTCCACTTGAATCAGCAGTTTCAAATTCCAATTCGATGAAGATACAGTGGACAAGAAGAGCTATTATACGGTTGTCAAGCGCTTAAAACCGTATTAAAAAATAAACCTCTGTAGTTCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TEQ6	Gem-associated protein 5 OS=Homo sapiens OX=9606 GN=GEMIN5 PE=1 SV=3
Q8BX17	Gem-associated protein 5 OS=Mus musculus OX=10090 GN=Gemin5 PE=1 SV=2
Q54IY5	Component of gems protein 5 OS=Dictyostelium discoideum OX=44689 GN=gemin5 PE=3 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR052640 all species →	Family	WD repeat domain-containing protein Gemin-5	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46362 all species →	GEM-ASSOCIATED PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032797 all species →	Cellular Component	SMN complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g12263.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g12263.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.