Detailed information of g123.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: APW77286.1, SoxF2 [Hydractinia echinata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P43680Transcription factor SOX-18 OS=Mus musculus OX=10090 GN=Sox18 PE=1 SV=3
P35713Transcription factor SOX-18 OS=Homo sapiens OX=9606 GN=SOX18 PE=1 SV=2
Q90ZH7Transcription factor Sox-18B OS=Xenopus laevis OX=8355 GN=sox18-b PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15433MRP-S31Mitochondrial 28S ribosomal protein S31FamilyInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13895Ig_2Immunoglobulin domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF10232Med8Mediator of RNA polymerase II transcription complex subunit 8FamilyInterproscan
PF04934Med6MED6 mediator sub complex componentFamilyInterproscan
PF02932Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF01549ShKShK domain-likeDomainInterproscan
PF15711ILEIInterleukin-like EMT inducerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026299FamilyMitochondrial 28S ribosomal protein S31Interproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR050140FamilySRY-related HMG-box transcription factorsInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR051275FamilyCellular adhesion and signaling domain-containing proteinInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR019364FamilyMediator complex, subunit Med8, fungi/metazoaInterproscan
IPR007018FamilyMediator complex, subunit Med6Interproscan
IPR016820FamilyMediator complex, subunit Med6, metazoa/plantInterproscan
IPR038566Homologous_superfamilyMediator complex, subunit Med6 superfamilyInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR006029DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR003582DomainShKT domainInterproscan
IPR039477DomainILEI/PANDER domainInterproscan
IPR039220FamilyFAM3 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13231MITOCHONDRIAL RIBOSOMAL PROTEIN S31Interproscan
PTHR10270SOX TRANSCRIPTION FACTORInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11640NEPHRINInterproscan
PTHR13074MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 8Interproscan
PTHR13104MED-6-RELATEDInterproscan
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan
PTHR14592UNCHARACTERIZED FAM3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005763Cellular Componentmitochondrial small ribosomal subunitInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0005911Cellular Componentcell-cell junctionInterproscan
GO:0050839Molecular Functioncell adhesion molecule bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0070847Cellular Componentcore mediator complexInterproscan
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005231Molecular Functionexcitatory extracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15128MED6; mediator of RNA polymerase II transcription subunit 6-Transcription factorsko03000deepkoala
Transcription machineryko03021deepkoala

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