Detailed information of g1233.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH3134050.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6NUP7Serine/threonine-protein phosphatase 4 regulatory subunit 4 OS=Homo sapiens OX=9606 GN=PPP4R4 PE=1 SV=1
Q8C0Y0Serine/threonine-protein phosphatase 4 regulatory subunit 4 OS=Mus musculus OX=10090 GN=Ppp4r4 PE=1 SV=2
Q32KS0Tubulin-specific chaperone E OS=Bos taurus OX=9913 GN=TBCE PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF13637Ank_4Ankyrin repeats (many copies)RepeatInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14580LRR_9Leucine-rich repeatRepeatInterproscan
PF01302CAP_GLYCAP-Gly domainDomainInterproscan
PF02985HEATHEAT repeatRepeatInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF04053Coatomer_WDADCoatomer WD associated region RepeatInterproscan
PF00318Ribosomal_S2Ribosomal protein S2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002110RepeatAnkyrin repeatInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR045151FamilyDDB1- and CUL4-associated factor 8-likeInterproscan
IPR000611FamilyNeuropeptide Y receptor familyInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR000938DomainCAP Gly-rich domainInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR044079DomainTBCE, ubiquitin-like (Ubl) domainInterproscan
IPR036859Homologous_superfamilyCAP Gly-rich domain superfamilyInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR039918FamilySerine/threonine-protein phosphatase 4 regulatory subunit 4Interproscan
IPR000357RepeatHEAT repeatInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR021133RepeatHEAT, type 2Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR016453FamilyCoatomer beta' subunit (COPB2)Interproscan
IPR050844FamilyCoatomer complex subunitInterproscan
IPR006692DomainCoatomer, WD associated regionInterproscan
IPR011044Homologous_superfamilyQuinoprotein amine dehydrogenase, beta chain-likeInterproscan
IPR001865FamilySmall ribosomal subunit protein uS2Interproscan
IPR018130Conserved_siteSmall ribosomal subunit protein uS2, conserved siteInterproscan
IPR005706FamilySmall ribosomal subunit protein uS2, bacteria/mitochondria/plastidInterproscan
IPR023591Homologous_superfamilySmall ribosomal subunit protein uS2, flavodoxin-like domain superfamilyInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24171ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATEDInterproscan
PTHR15574WD REPEAT DOMAIN-CONTAINING FAMILYInterproscan
PTHR45695LEUCOKININ RECEPTOR-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46545LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51Interproscan
PTHR21467PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4Interproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR19876COATOMERInterproscan
PTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARInterproscan
PTHR34718PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0080008Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan
GO:0004983Molecular Functionneuropeptide Y receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008287Cellular Componentprotein serine/threonine phosphatase complexInterproscan
GO:0019888Molecular Functionprotein phosphatase regulator activityInterproscan
GO:0032515Biological Processobsolete negative regulation of phosphoprotein phosphatase activityInterproscan
GO:0080163Biological Processobsolete regulation of protein serine/threonine phosphatase activityInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0030126Cellular ComponentCOPI vesicle coatInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015935Cellular Componentsmall ribosomal subunitInterproscan
GO:0022627Cellular Componentcytosolic small ribosomal subunitInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02967RP-S2, MRPS2, rpsB; small subunit ribosomal protein S2-DNA repair and recombination proteinsko03400deepkoala
Cytoskeleton proteinsko04812deepkoala
Membrane traffickingko04131deepkoala
Exosomeko04147deepkoala
Ribosomeko03011deepkoala

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