Gene detail

Detailed information of g12366.t1 in Acropora digitifera

Genomic Location: chr5Alt:32294422...32297993
NR annotation: XP_015771233.1, PREDICTED: ragulator complex protein LAMTOR1-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQ22	Ragulator complex protein LAMTOR1 OS=Mus musculus OX=10090 GN=Lamtor1 PE=1 SV=1
Q6IAA8	Ragulator complex protein LAMTOR1 OS=Homo sapiens OX=9606 GN=LAMTOR1 PE=1 SV=2
Q5R766	Ragulator complex protein LAMTOR1 OS=Pongo abelii OX=9601 GN=LAMTOR1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15454 all species →	LAMTOR	Late endosomal/lysosomal adaptor and MAPK and MTOR activator	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028209 all species →	Family	LAMTOR1/MEH1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13401 all species →	RAGULATOR COMPLEX PROTEIN LAMTOR1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001919 all species →	Biological Process	regulation of receptor recycling	Interproscan
GO:0007040 all species →	Biological Process	lysosome organization	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0032008 all species →	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0042632 all species →	Biological Process	cholesterol homeostasis	Interproscan
GO:0043410 all species →	Biological Process	positive regulation of MAPK cascade	Interproscan
GO:0045121 all species →	Cellular Component	membrane raft	Interproscan
GO:0071230 all species →	Biological Process	cellular response to amino acid stimulus	Interproscan
GO:0071986 all species →	Cellular Component	Ragulator complex	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20397	LAMTOR1; ragulator complex protein LAMTOR1	-	mTOR signaling pathway	ko04150	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g12366.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

74.9Max TPM

61.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	61.40	74.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	74.86
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	74.66
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	73.73
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	71.26
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	68.72
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	68.17
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	67.57
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	67.34
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	67.09
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	67.04
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	66.66
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	64.90
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	63.60
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	63.30
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	63.07
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	62.53
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	62.45
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	62.37
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	62.28
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	60.47
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	60.34
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	60.17
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	59.62
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	59.12
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	58.77
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	57.97
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	57.59
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	56.78
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	56.47
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	55.89
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	55.19
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	54.79
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	54.23
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	53.95
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	53.82
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	53.71
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	53.24
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	52.85
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	48.21

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.