Detailed information of g1237.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027035656.1, SPATS2-like protein [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8K1N4Spermatogenesis-associated serine-rich protein 2 OS=Mus musculus OX=10090 GN=Spats2 PE=1 SV=1
Q86XZ4Spermatogenesis-associated serine-rich protein 2 OS=Homo sapiens OX=9606 GN=SPATS2 PE=1 SV=1
P23403Small ribosomal subunit protein uS10 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04564U-boxU-box domainDomainInterproscan
PF10408Ufd2P_coreUbiquitin elongating factor coreFamilyInterproscan
PF00338Ribosomal_S10Ribosomal protein S10p/S20eDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF07139SPATS2-likeSpermatogenesis-associated serine-rich protein 2-likeFamilyInterproscan
PF05970PIF1PIF1-like helicaseFamilyInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF03221HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF04218CENP-B_NCENP-B N-terminal DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003613DomainU-box domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR045132FamilyUbiquitin conjugation factor E4Interproscan
IPR019474DomainUbiquitin conjugation factor E4, coreInterproscan
IPR027486DomainSmall ribosomal subunit protein uS10 domainInterproscan
IPR005729FamilySmall ribosomal subunit protein uS10, eukaryotic/archaealInterproscan
IPR001848FamilySmall ribosomal subunit protein uS10Interproscan
IPR036838Homologous_superfamilySmall ribosomal subunit protein uS10 domain superfamilyInterproscan
IPR029034Homologous_superfamilyCystine-knot cytokineInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR009816FamilySPATS2-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR010285FamilyDNA helicase Pif1-likeInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR007889DomainDNA binding HTH domain, Psq-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13931UBIQUITINATION FACTOR E4Interproscan
PTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR33198ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR15623SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATEDInterproscan
PTHR24246OLFACTORY RECEPTOR AND ADENOSINE RECEPTORInterproscan
PTHR24020COLLAGEN ALPHAInterproscan
PTHR19303TRANSPOSONInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0034450Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0036503Biological ProcessERAD pathwayInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015935Cellular Componentsmall ribosomal subunitInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0022627Cellular Componentcytosolic small ribosomal subunitInterproscan
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02969RP-S20e, RPS20; small subunit ribosomal protein S20e-Ribosomeko03011deepkoala

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